RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TMEM14EPQ6UXP3 125 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 ACOT7LQ6ZUV0 252 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 TCF24Q7RTU0 167 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 OR10P1Q8NGE3 313 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 ST8SIA2Q92186 375 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 SPATA25Q9BR10 227 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 GGACTQ9BVM4 153 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 SRD5A3Q9H8P0 318 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 SLC45A2Q9UMX9 530 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 U3KQK5 164 aa10.77□□□□□ -0.69
CCDC88C-207ENST00000554051 DFFBO76075 338 aa10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 MBPP02686 304 aaPredicted RBP10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 PSG1P11464 419 aa10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 CYCSP99999 105 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 FAM90A2PQ658T7 463 aa10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 TMEM144Q7Z5S9 345 aa10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 S100A7AQ86SG5 101 aa10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 FBXL17Q9UF56 701 aa10.76□□□□□ -0.69
CCDC88C-207ENST00000554051 IGHV3-49A0A0A0MS15 119 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 K7EPK0 472 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 SELENOTP62341 195 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 SAMD13Q5VXD3 122 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 SBSPONQ8IVN8 264 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 BPIFCQ8NFQ6 507 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 TM2D3Q9BRN9 247 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 RNF24Q9Y225 148 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 U3KQE9 123 aa10.75□□□□□ -0.69
CCDC88C-207ENST00000554051 IGKV1D-37A0A075B6S9 117 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 DNASE2O00115 360 aaPredicted RBP10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 PET100P0DJ07 73 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 S100A10P60903 97 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 RPL11P62913 178 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 USF2Q15853 346 aaPredicted RBP10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 C1orf194Q5T5A4 169 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 STX12Q86Y82 276 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 DEFB125Q8N687 156 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 ASCL2Q99929 193 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 GGTLC1Q9BX51 225 aa10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 LSM5Q9Y4Y9 91 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-207ENST00000554051 IGHV3OR16-13A0A075B7E8 117 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 LOC102724200A0A096LPH7 203 aaPredicted RBP10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 IGHV3-74A0A0B4J1X5 117 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 SMCO3A2RU48 225 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 C7orf66A4D0T2 115 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 METTL15P1P0C7V9 234 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 CAV2P51636 162 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 APOC4P55056 127 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 PAX9P55771 341 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 HBG1P69891 147 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 HBG2P69892 147 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 ODF3L2Q3SX64 289 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 C16orf54Q6UWD8 224 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 LINC00322Q6ZN03 302 aaPredicted RBP10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 GLMPQ8WWB7 406 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 PBDC1Q9BVG4 233 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 NMES1Q9C002 83 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 MS4A6AQ9H2W1 248 aa10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 SEPSECSQ9HD40 501 aaKnown RBP10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 LYRM2Q9NU23 88 aaPredicted RBP10.73□□□□□ -0.69
CCDC88C-207ENST00000554051 KIR2DL5BA0A0G2JN68 375 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 KIR2DL5BA0A0G2JPC4 375 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 PMS2P5A8MQ11 134 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 GOSR2O14653 212 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 SSNA1O43805 119 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 DEDDO75618 318 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 APOHP02749 345 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 RLN2P04090 185 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 BCAP31P51572 246 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 LYZP61626 148 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 ZNF90Q03938 601 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 HAGHQ16775 308 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 TEPPQ6URK8 271 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 ZNF546Q86UE3 836 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 KIR2DL5AQ8N109 375 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 STXBP6Q8NFX7 210 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 KIR2DL5BQ8NHK3 375 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 PPP1R14BQ96C90 147 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 WWC2-AS2Q96NR7 200 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 RCHY1Q96PM5 261 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 WFDC10AQ9H1F0 79 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 NPVFQ9HCQ7 196 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 SELENOKQ9Y6D0 94 aa10.72□□□□□ -0.69
CCDC88C-207ENST00000554051 IGKV1OR2-108A0A075B7D4 117 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 IGHV3-66A0A0C4DH42 116 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 UBE2CO00762 179 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 BUB3O43684 328 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 IL15RAQ13261 267 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 RAB31Q13636 194 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 PXDC1Q5TGL8 231 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 SIGLEC15Q6ZMC9 328 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 GPR82Q96P67 336 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 TMEM147Q9BVK8 224 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 MAP6D1Q9H9H5 199 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 NRN1Q9NPD7 142 aa10.71□□□□□ -0.69
CCDC88C-207ENST00000554051 TGP01266 2768 aa10.71□□□□□ -0.7
CCDC88C-207ENST00000554051 IGKV3-7A0A075B6H7 116 aa10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 TFPI2P48307 235 aa10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 SULT1A1P50225 295 aa10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 SNRPD3P62318 126 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 SLC38A11Q08AI6 406 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms