RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 USP34Q70CQ2 3546 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 IFT172Q9UG01 1749 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 TOGARAM1Q9Y4F4 1720 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 ZFHX2Q9C0A1 2572 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-210ENST00000552045 SPTBN4Q9H254 2564 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 ANKRD50Q9ULJ7 1429 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 TRAV9-1A0A075B6T8 112 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 IGHV3-7P01780 117 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 SERPINE1P05121 402 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 MAGEA12P43365 314 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 EMP1P54849 157 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 IBA57Q5T440 356 aaKnown RBP2.88□□□□□ -1.95
LIMA1-210ENST00000552045 DYNAPQ8N1N2 210 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 C9orf16Q9BUW7 83 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 C20orf27Q9GZN8 174 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 MON2Q7Z3U7 1717 aa2.88□□□□□ -1.95
LIMA1-210ENST00000552045 GREB1Q4ZG55 1949 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 RGPD8O14715 1765 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-210ENST00000552045 TRAV7A0A075B6U4 112 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 TRAV38-1A0A0B4J264 116 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 TRAV41A0A0B4J266 112 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 TRGV4A0A0C4DH28 118 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 FABP5P3A8MUU1 101 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 ZNF682O95780 498 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 MSMBP08118 114 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 RBP1P09455 135 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 SULT1A3P0DMM9 295 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 SULT1A4P0DMN0 295 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 SMIM10L2AP0DMW4 78 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 SMIM10L2BP0DMW5 78 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 CYBAP13498 195 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 EVX1P49640 407 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 DHRS4L2Q6PKH6 230 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 OR4X2Q8NGF9 303 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 CCDC90BQ9GZT6 254 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 ENY2Q9NPA8 101 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 ARMC1Q9NVT9 282 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 PRO2289Q9P1D8 64 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 SAMHD1Q9Y3Z3 626 aaKnown RBP2.87□□□□□ -1.95
LIMA1-210ENST00000552045 UBR3Q6ZT12 1888 aa2.87□□□□□ -1.95
LIMA1-210ENST00000552045 DOT1LQ8TEK3 1739 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 IGHV3-64A0A075B6Q5 118 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 IRGMA1A4Y4 181 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 RFPL4AA6NLU0 287 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 RFPL4AL1F8VTS6 287 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 J3QRE1 110 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 SULT1B1O43704 296 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 DEFA4P12838 97 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 HES1Q14469 280 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 KRT222Q8N1A0 295 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 C12orf45Q8N5I9 185 aaPredicted RBP2.86□□□□□ -1.95
LIMA1-210ENST00000552045 H1FXQ92522 213 aaKnown RBP2.86□□□□□ -1.95
LIMA1-210ENST00000552045 WDFY4Q6ZS81 3184 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 DCHS1Q96JQ0 3298 aa2.86□□□□□ -1.95
LIMA1-210ENST00000552045 COL4A2P08572 1712 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 hCG_1818297A0A087WSY0 165 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 A8MT66 165 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 LY6LH3BQJ8 138 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 H7C2G1 150 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 IFNA10P01566 189 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 PPBPP02775 128 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 RPP25LQ8N5L8 163 aaKnown RBP2.85□□□□□ -1.95
LIMA1-210ENST00000552045 AP3S1Q92572 193 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 CXCL16Q9H2A7 254 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 OPTCQ9UBM4 332 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 PTPN13Q12923 2485 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 COL4A5P29400 1685 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 RTL1A6NKG5 1358 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 GCN1Q92616 2671 aaKnown RBP2.85□□□□□ -1.95
LIMA1-210ENST00000552045 DAPK1P53355 1430 aa2.85□□□□□ -1.95
LIMA1-210ENST00000552045 MALRD1Q5VYJ5 2156 aa2.84□□□□□ -1.95
LIMA1-210ENST00000552045 TMSB15BA0A087X1C1 80 aa2.84□□□□□ -1.95
LIMA1-210ENST00000552045 C8GP07360 202 aa2.84□□□□□ -1.95
LIMA1-210ENST00000552045 ERHP84090 104 aaKnown RBP2.84□□□□□ -1.95
LIMA1-210ENST00000552045 MOGQ16653 247 aa2.84□□□□□ -1.95
LIMA1-210ENST00000552045 ZNF791Q3KP31 576 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-210ENST00000552045 Q8NDZ9 215 aa2.84□□□□□ -1.95
LIMA1-210ENST00000552045 SLC7A6Q92536 515 aa2.84□□□□□ -1.95
LIMA1-210ENST00000552045 CHST6Q9GZX3 395 aa2.84□□□□□ -1.95
LIMA1-210ENST00000552045 LAMB2P55268 1798 aa2.84□□□□□ -1.96
LIMA1-210ENST00000552045 CCDC88AQ3V6T2 1871 aa2.84□□□□□ -1.96
LIMA1-210ENST00000552045 CDH23Q9H251 3354 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 IGHV1-18A0A0C4DH31 117 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 A0A0G2JQZ4 141 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 SLC22A1O15245 554 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 KISS1Q15726 138 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 SPANXN3Q5MJ09 141 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 KRTAP5-5Q701N2 237 aaPredicted RBP2.83□□□□□ -1.96
LIMA1-210ENST00000552045 VCX3BQ9H321 246 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 CYSLTR1Q9Y271 337 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 COL5A1P20908 1838 aaPredicted RBP2.83□□□□□ -1.96
LIMA1-210ENST00000552045 ZNF532Q9HCE3 1301 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 CPAMD8Q8IZJ3 1885 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 DOCK3Q8IZD9 2030 aa2.83□□□□□ -1.96
LIMA1-210ENST00000552045 ANKRD17O75179 2603 aaKnown RBP2.83□□□□□ -1.96
LIMA1-210ENST00000552045 TAF1LQ8IZX4 1826 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 FER1L6Q2WGJ9 1857 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 MPDZO75970 2070 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 ARRDC5A6NEK1 342 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 OR5F1O95221 314 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms