RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TEX48A0A1B0GUV7 120 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 HIGD1CA8MV81 97 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 A8MWV9 139 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 GFI1Q99684 422 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 TMEM160Q9NX00 188 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 MYO10Q9HD67 2058 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 MGAMO43451 1857 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 COLCA2A8K830 154 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 LGALS1P09382 135 aaKnown RBP6.44□□□□□ -1.38
VPS13D-211ENST00000543710 CRYBA2P53672 197 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 EFNB3Q15768 340 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 PSG3Q16557 428 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF474Q6S9Z5 364 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-211ENST00000543710 SFTA2Q6UW10 78 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 DUX3Q96PT4 197 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 TRAV24A0A0B4J272 114 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 A0A0G2JNJ9 132 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 A0A1W2PPE3 182 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 H3BUA1 57 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 IGKV1D-33P01593 117 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 IGKV1-33P01594 117 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 ATP5G3P48201 142 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 FAM219BQ5XKK7 198 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 KLHL30-AS1Q8NEE0 82 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 DNAJC30Q96LL9 226 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 NEU1Q99519 415 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 PRO3102Q9H379 93 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 Q9UFV3 132 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 PLXNA4Q9HCM2 1894 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF815PA8K554 130 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 SSBP2P81877 361 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-211ENST00000543710 WFDC1Q9HC57 220 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 A0A0A6YYD4 124 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF415Q09FC8 603 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 FAM231DQ6ZW35 169 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 LINC00469Q8N7U9 141 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 PRADC1Q9BSG0 188 aa6.44□□□□□ -1.38
VPS13D-211ENST00000543710 CNOT1A5YKK6 2376 aaKnown RBP6.44□□□□□ -1.38
VPS13D-211ENST00000543710 SERF1AO75920 110 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 NAPSAO96009 420 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 CGB3P0DN86 165 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 BCL6BQ8N143 479 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 PNRC2Q9NPJ4 139 aaKnown RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 SCN8AQ9UQD0 1980 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 ABCA7Q8IZY2 2146 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 H0YIZ8 118 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 UMODP07911 640 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 CCL3L1P16619 93 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 GAGE1Q13065 139 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 IL17RELQ6ZVW7 336 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 TPTE2P1Q5T6R2 138 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF826PQ6ZT77 177 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 MRPL53Q96EL3 112 aaKnown RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 A0A1B0GWB2 263 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BKO60814 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BJP06899 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BOP23527 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BBP33778 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BDP58876 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BCP62807 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST2H2BEQ16778 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 PAQR4Q8N4S7 273 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BHQ93079 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BNQ99877 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BMQ99879 126 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 CD5LO43866 347 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 CGB7P0DN87 165 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 RNASE4P34096 147 aaKnown RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 SUMO2P61956 95 aaKnown RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 DAZAP2Q15038 168 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-211ENST00000543710 TMEM86BQ8N661 226 aa6.43□□□□□ -1.38
VPS13D-211ENST00000543710 SMCHD1A6NHR9 2005 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 IGHV1-18A0A0C4DH31 117 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 A0A1B0GWJ7 208 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 SHISA3A0PJX4 238 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 MSGN1A6NI15 193 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 SRRM5B3KS81 715 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 POU2AF1Q16633 256 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 KLF17Q5JT82 389 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF329Q86UD4 541 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 CRIPAKQ8N1N5 446 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 SVIPQ8NHG7 77 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 ZFC3H1O60293 1989 aaKnown RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 NUP210Q8TEM1 1887 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 MBD3L4A6NDZ8 208 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 MBD3L3A6NE82 208 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 MBD3L5A6NJ08 208 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 IGHG3P01860 377 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 SAMD5Q5TGI4 173 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 MBD3L2Q8NHZ7 208 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 ANAPC13Q9BS18 74 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 CELA3AP09093 270 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 RFPL3SP0C7P2 107 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 ESDP10768 282 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 WT1P19544 449 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 PSG7Q13046 419 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 TMEM170BQ5T4T1 132 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 TREML4Q6UXN2 200 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 LINC00311Q8N616 119 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms