RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 OR5G3P0C626 314 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 DEFA5Q01523 94 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 LCN15Q6UWW0 184 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 SSX7Q7RTT5 188 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 CCDC140Q96MF4 163 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 KLK15Q9H2R5 256 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 SLC25A22Q9H936 323 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 SERTAD4Q9NUC0 356 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 OR2T8A6NH00 312 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 CRYBA1P05813 215 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 ELANEP08246 267 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 PMS2P11Q13670 270 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 FAM209BQ5JX69 171 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 FAM78BQ5VT40 261 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 Q71RC1 249 aaPredicted RBP13.77□□□□□ -0.21
CLIP1-215ENST00000541108 ZNF329Q86UD4 541 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 Q8WTZ3 238 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 MRPL32Q9BYC8 188 aaKnown RBP13.77□□□□□ -0.21
CLIP1-215ENST00000541108 FUT9Q9Y231 359 aa13.77□□□□□ -0.21
CLIP1-215ENST00000541108 COX7A2P2O60397 106 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 OR2C1O95371 312 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 IGHV3-23P01764 117 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 STAG3L2P0CL84 134 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 STAG3L3P0CL85 134 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 ADMP35318 185 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 FOXE3Q13461 319 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 C10orf113Q5VZT2 155 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 Q6ZSV7 163 aa13.76□□□□□ -0.21
CLIP1-215ENST00000541108 ATP6V1G1O75348 118 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 HYPMO75409 117 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 GPR183P32249 361 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 UQCC3Q6UW78 93 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 CLEC19AQ6UXS0 136 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 PATE2Q6UY27 113 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 ZNF491Q8N8L2 437 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 RNF152Q8N8N0 203 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 FAM210AQ96ND0 272 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 CITED4Q96RK1 184 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 TGOLN2O43493 480 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 CRLF1O75462 422 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 ORM2P19652 201 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 TAS2R45P59539 299 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 CCL20P78556 96 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 CHRDL1Q9BU40 450 aa13.75□□□□□ -0.21
CLIP1-215ENST00000541108 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.74□□□□□ -0.21
CLIP1-215ENST00000541108 WI2-2373I1.2A0A1W2PRP0 233 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 CXorf1O96002 111 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 ZNF343Q6P1L6 599 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 ZNF600Q6ZNG1 722 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 S100A7AQ86SG5 101 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 OR1B1Q8NGR6 318 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 RNF125Q96EQ8 232 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 PBDC1Q9BVG4 233 aa13.74□□□□□ -0.21
CLIP1-215ENST00000541108 TECRQ9NZ01 308 aaKnown RBP13.74□□□□□ -0.21
CLIP1-215ENST00000541108 MRPL27Q9P0M9 148 aaKnown RBP13.74□□□□□ -0.21
CLIP1-215ENST00000541108 A0A1B0GV50 99 aa13.73□□□□□ -0.21
CLIP1-215ENST00000541108 HMGB3O15347 200 aaKnown RBP13.73□□□□□ -0.21
CLIP1-215ENST00000541108 PSMB3P49720 205 aa13.73□□□□□ -0.21
CLIP1-215ENST00000541108 FGF8P55075 233 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-215ENST00000541108 RELQ04864 619 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-215ENST00000541108 LINC00305Q7Z4B0 112 aa13.73□□□□□ -0.21
CLIP1-215ENST00000541108 MYOZ3Q8TDC0 251 aa13.73□□□□□ -0.21
CLIP1-215ENST00000541108 SMDT1Q9H4I9 107 aa13.73□□□□□ -0.21
CLIP1-215ENST00000541108 C16orf95Q9H693 158 aa13.73□□□□□ -0.21
CLIP1-215ENST00000541108 DOK5Q9P104 306 aa13.73□□□□□ -0.21
CLIP1-215ENST00000541108 IL4P05112 153 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 C8orf88P0DMB2 117 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 LYZP61626 148 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 KIAA0141Q14154 515 aaPredicted RBP13.72□□□□□ -0.21
CLIP1-215ENST00000541108 PQLC2Q6ZP29 291 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 MIR17HGQ75NE6 70 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 HIGD1AQ9Y241 93 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 TCF21O43680 179 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 PPT1P50897 306 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 GUK1Q16774 197 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 KHDC3LQ587J8 217 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 SPATA31B1PQ5VZV4 182 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 C10orf99Q6UWK7 81 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 KLHDC1Q8N7A1 406 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 SCRT1Q9BWW7 348 aa13.72□□□□□ -0.21
CLIP1-215ENST00000541108 NSD1Q96L73 2696 aaPredicted RBP13.71□□□□□ -0.21
CLIP1-215ENST00000541108 RBFOX3A6NFN3 312 aa13.71□□□□□ -0.21
CLIP1-215ENST00000541108 EIF3GO75821 320 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLIP1-215ENST00000541108 CD5P06127 495 aa13.71□□□□□ -0.21
CLIP1-215ENST00000541108 TAGLN2P37802 199 aaKnown RBP13.71□□□□□ -0.21
CLIP1-215ENST00000541108 STXBP6Q8NFX7 210 aa13.71□□□□□ -0.21
CLIP1-215ENST00000541108 OR4X2Q8NGF9 303 aa13.71□□□□□ -0.21
CLIP1-215ENST00000541108 UBE2E2Q96LR5 201 aa13.71□□□□□ -0.21
CLIP1-215ENST00000541108 UHRF2Q96PU4 802 aa13.71□□□□□ -0.21
CLIP1-215ENST00000541108 PUS1Q9Y606 427 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLIP1-215ENST00000541108 SETXQ7Z333 2677 aaKnown RBP13.7□□□□□ -0.22
CLIP1-215ENST00000541108 IFNA1P01562 189 aa13.7□□□□□ -0.22
CLIP1-215ENST00000541108 ARL14EPLP0DKL9 152 aa13.7□□□□□ -0.22
CLIP1-215ENST00000541108 S100A1P23297 94 aa13.7□□□□□ -0.22
CLIP1-215ENST00000541108 S100A7P31151 101 aa13.7□□□□□ -0.22
CLIP1-215ENST00000541108 ARL3P36405 182 aa13.7□□□□□ -0.22
CLIP1-215ENST00000541108 PEA15Q15121 130 aa13.7□□□□□ -0.22
CLIP1-215ENST00000541108 LCNL1Q6ZST4 164 aa13.7□□□□□ -0.22
CLIP1-215ENST00000541108 EIF5A2Q9GZV4 153 aaKnown RBP13.7□□□□□ -0.22
CLIP1-215ENST00000541108 RNF24Q9Y225 148 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms