RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 IFI6P09912 130 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 RNASE4P34096 147 aaKnown RBP7.24□□□□□ -1.25
YBX3-208ENST00000540447 TMEM30BQ3MIR4 351 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 TMEM190Q8WZ59 177 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 PAX1P15863 534 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 Q6ZUT4 128 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 SCRT2Q9NQ03 307 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 SCN2AQ99250 2005 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 CABIN1Q9Y6J0 2220 aa7.24□□□□□ -1.25
YBX3-208ENST00000540447 NUPR1O60356 82 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 CD69Q07108 199 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 BADQ92934 168 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 PILRAQ9UKJ1 303 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 SCN11AQ9UI33 1791 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 IGHV3-35A0A0C4DH35 117 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 CD24P25063 80 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 RSPO4Q2I0M5 234 aaPredicted RBP7.23□□□□□ -1.25
YBX3-208ENST00000540447 U3KQE9 123 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 DOCK11Q5JSL3 2073 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 SMIM27A0A1W2PRY6 76 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 UPK2O00526 184 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 CCL3P10147 92 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 HAMPP81172 84 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 ATP6V0E2Q8NHE4 81 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 FAM90A9PA6NNJ1 464 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 PAX4O43316 350 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 SPACA3Q8IXA5 215 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 SSC5DA1L4H1 1573 aa7.23□□□□□ -1.25
YBX3-208ENST00000540447 IGHV3OR16-13A0A075B7E8 117 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 IGHV3-74A0A0B4J1X5 117 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 IGKV1-9A0A0C4DH69 117 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 M0QXV9 152 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 HLA-DRB4P13762 266 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 PEMTQ9UBM1 199 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 HLA-DRB4X5D2U9 266 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 PKD1L3Q7Z443 1732 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 SDK1Q7Z5N4 2213 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 MYO9BQ13459 2157 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 LMO7DNF2Z398 122 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 SRD5A1P18405 259 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 FAM57AQ8TBR7 257 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 VOPP1Q96AW1 172 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 TIMM21Q9BVV7 248 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 SCN1AP35498 2009 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 DDX60Q8IY21 1712 aaKnown RBP7.22□□□□□ -1.25
YBX3-208ENST00000540447 IGKV1D-43A0A0B4J1Z2 117 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 IGHV3-66A0A0C4DH42 116 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 CYYR1Q96J86 154 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 COLQQ9Y215 455 aaPredicted RBP7.22□□□□□ -1.25
YBX3-208ENST00000540447 IGHV3OR16-12A0A075B7B8 117 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 FAM90A27PA6NNH2 459 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 MT-ATP8P03928 68 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 DYNLRB2Q8TF09 96 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 ARMS2P0C7Q2 107 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 PCP2Q8IVA1 136 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 PYGO2Q9BRQ0 406 aa7.22□□□□□ -1.25
YBX3-208ENST00000540447 WIPF3A6NGB9 483 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 C4orf51C9J302 202 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 FOXS1O43638 330 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 CD3EP07766 207 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 LINC00271P0C7V0 271 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 RPL32P62910 135 aaKnown RBP7.21□□□□□ -1.25
YBX3-208ENST00000540447 KLF5Q13887 457 aaPredicted RBP7.21□□□□□ -1.25
YBX3-208ENST00000540447 ZNF726P1Q15940 193 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 C3orf36Q3SXR2 165 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 LINC00114Q6XXX2 140 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 ELSPBP1Q96BH3 223 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 NUP98P52948 1817 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 IGKV3-20P01619 116 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 C8orf46Q8TAG6 207 aa7.21□□□□□ -1.25
YBX3-208ENST00000540447 HEATR5BQ9P2D3 2071 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 CFHR2P36980 270 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 FAM166AQ6J272 317 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 SH2D1AO60880 128 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 TMEM196Q5HYL7 178 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 TMEM54Q969K7 222 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 S4R3C0 116 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 TRAV12-1A0A0B4J245 112 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 IGKV1-5P01602 117 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 CCL7P80098 99 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 CHCHD5Q9BSY4 110 aa7.21□□□□□ -1.26
YBX3-208ENST00000540447 ZNF329Q86UD4 541 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 EXOC3-AS1Q8N2X6 119 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 SPATA25Q9BR10 227 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 RNF186Q9NXI6 227 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 IGHV3-23P01764 117 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 LINC00479Q96M42 142 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 F5H768 121 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 NTF4P34130 210 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 C20orf78Q9BR46 151 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 IGHV3-49A0A0A0MS15 119 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 A0A0B4J2C4 111 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 PRCDQ00LT1 54 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 SPINK14Q6IE38 97 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 ITLN1Q8WWA0 313 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 RASL10AQ92737 203 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 EEF1AKMT3Q96AZ1 226 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 CFC1BP0CG36 223 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 CFC1P0CG37 223 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 MAGEA5P43359 124 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms