RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 CCL21O00585 134 aa8.21□□□□□ -1.09
TRAF1-202ENST00000540010 LIPFP07098 398 aa8.21□□□□□ -1.09
TRAF1-202ENST00000540010 OSR1Q8TAX0 266 aaPredicted RBP8.21□□□□□ -1.09
TRAF1-202ENST00000540010 TMEM186Q96B77 213 aa8.21□□□□□ -1.09
TRAF1-202ENST00000540010 PPIAL4CA0A0B4J2A2 164 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 LOC107984156A0A0G2JMH3 177 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 ZNF324O75467 553 aaPredicted RBP8.21□□□□□ -1.1
TRAF1-202ENST00000540010 FOXH1O75593 365 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 IGHV3-23P01764 117 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 APOHP02749 345 aaPredicted RBP8.21□□□□□ -1.1
TRAF1-202ENST00000540010 PPIAL4GP0DN37 164 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 ARL17AQ8IVW1 177 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 UBTD1Q9HAC8 227 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 STAG3L2P0CL84 134 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 STAG3L3P0CL85 134 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 PNKDQ8N490 385 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 TNCP24821 2201 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 NOTCH2Q04721 2471 aa8.21□□□□□ -1.1
TRAF1-202ENST00000540010 C15orf61A6NNL5 157 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 CD24P25063 80 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 ZNF585BQ52M93 769 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 Q8NA96 180 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 ELOVL5Q9NYP7 299 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 PLXNB1O43157 2135 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 TRBV6-6A0A0A6YYG2 114 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 YPEL1O60688 119 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 FABP2P12104 132 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 RELQ04864 619 aaPredicted RBP8.2□□□□□ -1.1
TRAF1-202ENST00000540010 TMEM78Q5T7P6 136 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 GRAMD2BQ96HH9 432 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 GPR82Q96P67 336 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 YPEL2Q96QA6 119 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 MLANAQ16655 118 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 PRR7Q8TB68 274 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 IGF2RP11717 2491 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 CSPG4Q6UVK1 2322 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 TRAV8-6A0A0B4J262 113 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 IZUMO1RA6ND01 250 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 PAX9P55771 341 aa8.2□□□□□ -1.1
TRAF1-202ENST00000540010 CHD3Q12873 2000 aaKnown RBP8.19□□□□□ -1.1
TRAF1-202ENST00000540010 PTPN13Q12923 2485 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 IGHV3-66A0A0C4DH42 116 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 A0A1B0GUT8 65 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 H7C2G1 150 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 M0QZ24 198 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 BMI1P35226 326 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 C11orf53Q8IXP5 236 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 FOXA2Q9Y261 457 aaPredicted RBP8.19□□□□□ -1.1
TRAF1-202ENST00000540010 BOD1L1Q8NFC6 3051 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 UPK2O00526 184 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 TDGF1P3P51864 188 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 NUTF2P61970 127 aaKnown RBP8.19□□□□□ -1.1
TRAF1-202ENST00000540010 CDPF1Q6NVV7 123 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 UNQ5815/PRO19632Q6UWF5 114 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 EREGO14944 169 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 IGHV2-70P01814 119 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 IGHV2-5P01817 119 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 MFAP4P55083 255 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 BSPH1Q075Z2 132 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 FOXL1Q12952 345 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 MGST2Q99735 147 aa8.19□□□□□ -1.1
TRAF1-202ENST00000540010 CD69Q07108 199 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 C10orf91Q5T1B1 145 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 RPP21Q9H633 154 aaKnown RBP8.18□□□□□ -1.1
TRAF1-202ENST00000540010 OSTCQ9NRP0 149 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 MSMPQ1L6U9 139 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 DNLZQ5SXM8 178 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 C1orf194Q5T5A4 169 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 DGAT2L7PQ6IED9 249 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 CACNG8Q8WXS5 425 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 LINC00479Q96M42 142 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 DIRC2Q96SL1 478 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 CLEC7AQ9BXN2 247 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 MAP1LC3AQ9H492 121 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 TMEM160Q9NX00 188 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 ZNF414Q96IQ9 312 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 C16orf92Q96LL3 132 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 HIST1H4GQ99525 98 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 TMEM208Q9BTX3 173 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 Q9H3A6 140 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 PIEZO1Q92508 2521 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 TLN1Q9Y490 2541 aaKnown RBP8.18□□□□□ -1.1
TRAF1-202ENST00000540010 C2CD3Q4AC94 2353 aa8.18□□□□□ -1.1
TRAF1-202ENST00000540010 IGHV1-69-2A0A0G2JMI3 117 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 PFN1P07737 140 aaKnown RBP8.17□□□□□ -1.1
TRAF1-202ENST00000540010 IL15RAQ13261 267 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 CCDC144NLQ6NUI1 221 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 LINC01560Q8TB33 94 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 COQ2Q96H96 371 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 FRYQ5TBA9 3013 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 A0A1W2PRE2 83 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 C15orf62A8K5M9 175 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 SRRM5B3KS81 715 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 LYNX1G3V0Z9 82 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 M0R3E3 92 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 LYNX1P0DP58 116 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 DLX1P56177 255 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 ATP5IP56385 69 aaPredicted RBP8.17□□□□□ -1.1
TRAF1-202ENST00000540010 NIT1Q86X76 327 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 CD177Q8N6Q3 437 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms