RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PSMB11A5LHX3 300 aa9.09□□□□□ -0.96
SYNE1-237ENST00000539504 ZNF883P0CG24 379 aa9.09□□□□□ -0.96
SYNE1-237ENST00000539504 GSX1Q9H4S2 264 aaPredicted RBP9.09□□□□□ -0.96
SYNE1-237ENST00000539504 ST20Q9HBF5 79 aa9.09□□□□□ -0.96
SYNE1-237ENST00000539504 PKDREJQ9NTG1 2253 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 TRAV17A0A0B4J275 112 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 IGHV2-70DA0A0C4DH43 119 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 MUC21A0A0G2JKD1 596 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 MUC21A0A140T8X8 626 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 SNAI2O43623 268 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 CD59P13987 128 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 HTR1DP28221 377 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 MUC21Q5SSG8 566 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 LINC00322Q6ZN03 302 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-237ENST00000539504 STXBP6Q8NFX7 210 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 VSTM2AQ8TAG5 236 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 URB1-AS1Q96HZ7 61 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 COL6A3P12111 3177 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 TRAV8-1A0A0A6YYK1 113 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 OR2T8A6NH00 312 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 IGHV1-46P01743 117 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 DIAPH2-AS1Q14236 149 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 SAPCD1Q5SSQ6 148 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 LDLRAD2Q5SZI1 272 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 ZCCHC24Q8N2G6 241 aaKnown RBP9.08□□□□□ -0.96
SYNE1-237ENST00000539504 OR4C13Q8NGP0 309 aa9.08□□□□□ -0.96
SYNE1-237ENST00000539504 FAM87AP0C7U9 286 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 ZNF788Q6ZQV5 615 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 TM4SF5O14894 197 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 LRRC10Q5BKY1 277 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 PRNTQ86SH4 94 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 GTSF1Q8WW33 167 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 TRAV30A0A087WSZ9 112 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 A0A087X0K7 114 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 A0A1B0GXF2 115 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 PSG1P11464 419 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 AMMECR1LQ6DCA0 310 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 C12orf54Q6X4T0 127 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 RBPMS2Q6ZRY4 209 aaKnown RBP9.07□□□□□ -0.96
SYNE1-237ENST00000539504 C5orf17Q8NAS9 161 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 Q9H3A6 140 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 NCOR1P1Q9H4R4 102 aa9.07□□□□□ -0.96
SYNE1-237ENST00000539504 CNOT1A5YKK6 2376 aaKnown RBP9.06□□□□□ -0.96
SYNE1-237ENST00000539504 IGKV1D-37A0A075B6S9 117 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.06□□□□□ -0.96
SYNE1-237ENST00000539504 LIPFP07098 398 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 LYZP61626 148 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 VMA21Q3ZAQ7 101 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 CHCHD1Q96BP2 118 aaKnown RBP9.06□□□□□ -0.96
SYNE1-237ENST00000539504 LINC00312Q9Y6C7 94 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 TCTAP57738 103 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 CIARTQ8N365 385 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-237ENST00000539504 TPSG1Q9NRR2 321 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 K7EP13 123 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 OR5AL1P0C617 328 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 TIMM23BQ5SRD1 257 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 BVES-AS1Q5T3Y7 98 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 ZNF833PQ6ZTB9 187 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 TMEM167AQ8TBQ9 72 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 TMUB1Q9BVT8 246 aa9.06□□□□□ -0.96
SYNE1-237ENST00000539504 EP300Q09472 2414 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-237ENST00000539504 CDKN1BP46527 198 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 ZNF474Q6S9Z5 364 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-237ENST00000539504 GOLT1AQ6ZVE7 132 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 FAM222BQ8WU58 562 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 ASCL2Q99929 193 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 DKK4Q9UBT3 224 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 HSPB8Q9UJY1 196 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 TMEM265A0A087WTH1 108 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 A0A1W2PPI3 338 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 TCRAP04437 139 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 DEFB109BQ30KR1 87 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 RPRMLQ8N4K4 120 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 GVINP1Q7Z2Y8 2422 aa9.05□□□□□ -0.96
SYNE1-237ENST00000539504 TAX1BP3O14907 124 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 HLA-DRB1P01911 266 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 FAM120AOSQ5T036 256 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 OR5AN1Q8NGI8 311 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 CCL17Q92583 94 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 FMC1Q96HJ9 113 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 C7orf69Q9H7B7 122 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 SELENOKQ9Y6D0 94 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 TECTAO75443 2155 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 C22orf46C9J442 243 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 ARF6P62330 175 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 FA2HQ7L5A8 372 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 PRSS3P2Q8NHM4 247 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 GATA4P43694 442 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 FAM27E3Q08E93 113 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 SRSF12Q8WXF0 261 aaKnown RBP9.04□□□□□ -0.96
SYNE1-237ENST00000539504 AP1S3Q96PC3 154 aa9.04□□□□□ -0.96
SYNE1-237ENST00000539504 SOX21Q9Y651 276 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-237ENST00000539504 CDX4O14627 284 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-237ENST00000539504 APOHP02749 345 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-237ENST00000539504 WT1P19544 449 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-237ENST00000539504 UQCRFS1P47985 274 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 TMEM30BQ3MIR4 351 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 RUSC1-AS1Q66K80 236 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 EXOC3-AS1Q8N2X6 119 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 ZNF318Q5VUA4 2279 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms