RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 PRTN3P24158 256 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 IER3P46695 156 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 CX3CL1P78423 397 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 RPL19P84098 196 aaKnown RBP10.65□□□□□ -0.71
VPS33B-202ENST00000535906 MMDQ15546 238 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 FBLN7Q53RD9 439 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 CMTM2Q8TAZ6 248 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 GNB1LQ9BYB4 327 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 TP53TG3Q9ULZ0 132 aa10.65□□□□□ -0.71
VPS33B-202ENST00000535906 ODF3BA8MYP8 253 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 SNURFLB1AK76 121 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 CRISP2P16562 243 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 BPIFB3P59826 476 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 RAB4BP61018 213 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 LINC00305Q7Z4B0 112 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 GSX1Q9H4S2 264 aaPredicted RBP10.64□□□□□ -0.71
VPS33B-202ENST00000535906 WNK2Q9Y3S1 2297 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 FRMD6-AS1P0C7T7 363 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 ESDP10768 282 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 ORM2P19652 201 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 GNLYP22749 145 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 ZFP36P26651 326 aaKnown RBP10.64□□□□□ -0.71
VPS33B-202ENST00000535906 GPR6P46095 362 aaPredicted RBP10.64□□□□□ -0.71
VPS33B-202ENST00000535906 TAS2R60P59551 318 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 AKAP6Q13023 2319 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 LINC00469Q8N7U9 141 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 MS4A10Q96PG2 267 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 TRGV9Q99603 122 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 PAXXQ9BUH6 204 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 UBTD1Q9HAC8 227 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 CDC42EP3Q9UKI2 254 aa10.64□□□□□ -0.71
VPS33B-202ENST00000535906 C19orf84I3L1E1 186 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 SNRPCP09234 159 aaKnown RBP10.63□□□□□ -0.71
VPS33B-202ENST00000535906 LINC00310P59036 64 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 PAFAH1B2P68402 229 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 FXYD3Q14802 87 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 IBA57Q5T440 356 aaKnown RBP10.63□□□□□ -0.71
VPS33B-202ENST00000535906 OR1B1Q8NGR6 318 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 CORTO00230 105 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 CNIH1O95406 144 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 SCGB1D1O95968 90 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 CEACAM3P40198 252 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 Q0VG73 95 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 WDR73Q6P4I2 378 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 C22orf15Q8WYQ4 148 aa10.63□□□□□ -0.71
VPS33B-202ENST00000535906 A6NNC1 897 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 NBR2O15453 112 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 MT-ND6P03923 174 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 MGST1P10620 155 aaKnown RBP10.62□□□□□ -0.71
VPS33B-202ENST00000535906 PAX2Q02962 417 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 COX19Q49B96 90 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 VMO1Q7Z5L0 202 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 FXYD5Q96DB9 178 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 WNT10AQ9GZT5 417 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 SMIM27A0A1W2PRY6 76 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 TPPP2P59282 170 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 DYNAPQ8N1N2 210 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 NDUFAF3Q9BU61 184 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 NAGKQ9UJ70 344 aa10.62□□□□□ -0.71
VPS33B-202ENST00000535906 CACNA1AO00555 2505 aa10.61□□□□□ -0.71
VPS33B-202ENST00000535906 I3L2K1 104 aa10.61□□□□□ -0.71
VPS33B-202ENST00000535906 SERF1AO75920 110 aa10.61□□□□□ -0.71
VPS33B-202ENST00000535906 RANP62826 216 aaKnown RBP10.61□□□□□ -0.71
VPS33B-202ENST00000535906 C1orf122Q6ZSJ8 110 aa10.61□□□□□ -0.71
VPS33B-202ENST00000535906 ZNF329Q86UD4 541 aa10.61□□□□□ -0.71
VPS33B-202ENST00000535906 NPBQ8NG41 125 aa10.61□□□□□ -0.71
VPS33B-202ENST00000535906 LINC00479Q96M42 142 aa10.61□□□□□ -0.71
VPS33B-202ENST00000535906 FAM103A1Q9BTL3 118 aaKnown RBP10.61□□□□□ -0.71
VPS33B-202ENST00000535906 NDUFA3O95167 84 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 HES1Q14469 280 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 TMEM136Q6ZRR5 245 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 NAT8BQ9UHF3 227 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 COL12A1Q99715 3063 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 PEX7O00628 323 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 SPINK4O60575 86 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 BAGE3Q86Y29 109 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 BAGE2Q86Y30 109 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 PERPQ96FX8 193 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 SERTAD4Q9NUC0 356 aa10.6□□□□□ -0.71
VPS33B-202ENST00000535906 AMY1AP04745 511 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 IGLC1P0CG04 106 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 HOXB4P17483 251 aaPredicted RBP10.59□□□□□ -0.71
VPS33B-202ENST00000535906 TCL1AP56279 114 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 LBHQ53QV2 105 aaPredicted RBP10.59□□□□□ -0.71
VPS33B-202ENST00000535906 NHLRC2Q8NBF2 726 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 STXBP6Q8NFX7 210 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 SRSF8Q9BRL6 282 aaKnown RBP10.59□□□□□ -0.71
VPS33B-202ENST00000535906 CFAP46Q8IYW2 2715 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 VPS13CQ709C8 3753 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 HYPMO75409 117 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 PSG1P11464 419 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 MYCNOSP40205 109 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 EFNA4P52798 201 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 SLC35B1P78383 322 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 LEMD1Q68G75 181 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 FAM231DQ6ZW35 169 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 Q6ZWC4 215 aa10.59□□□□□ -0.71
VPS33B-202ENST00000535906 POLR3KQ9Y2Y1 108 aaPredicted RBP10.59□□□□□ -0.71
VPS33B-202ENST00000535906 SPTAN1Q13813 2472 aaKnown RBP10.58□□□□□ -0.71
VPS33B-202ENST00000535906 F2Z2F3 143 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms