RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 BET1O15155 118 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 RER1O15258 196 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 PLIN3O60664 434 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 S1PR2O95136 353 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 OR5F1O95221 314 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 IGKV2D-28P01615 120 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 RPS17P08708 135 aaKnown RBP2.12□□□□□ -2.07
CD44-235ENST00000532339 CDK2P24941 298 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 CRABP2P29373 138 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 LSM6P62312 80 aaKnown RBP2.12□□□□□ -2.07
CD44-235ENST00000532339 HBA1P69905 142 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 ZNF816Q0VGE8 651 aaPredicted RBP2.12□□□□□ -2.07
CD44-235ENST00000532339 GPR176Q14439 515 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 PSG3Q16557 428 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 CDNFQ49AH0 187 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 AKIRIN2Q53H80 203 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 ACTBL2Q562R1 376 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 SPIN3Q5JUX0 258 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 ACTL10Q5JWF8 245 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 TNFAIP8L2Q6P589 184 aaPredicted RBP2.12□□□□□ -2.07
CD44-235ENST00000532339 OR1S1Q8NH92 325 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 CCDC42Q96M95 316 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 PDCD1LG2Q9BQ51 273 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 UPK3BQ9BT76 320 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 CHCHD7Q9BUK0 85 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 CHST5Q9GZS9 411 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 VAPAQ9P0L0 249 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 SLC7A11Q9UPY5 501 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 AP3M1Q9Y2T2 418 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 A0A1B0GW15 77 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 H3BUA1 57 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 ZNF737O75373 536 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 BANF1O75531 89 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 GATBO75879 557 aaKnown RBP2.11□□□□□ -2.07
CD44-235ENST00000532339 ASAH2BP0C7U1 165 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 HTN3P15516 51 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 IL3RAP26951 378 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 ALDH3A1P30838 453 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 PRSS3P35030 304 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 KCNJ3P48549 501 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 CMC4P56277 68 aaPredicted RBP2.11□□□□□ -2.07
CD44-235ENST00000532339 HIST1H3AP68431 136 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 HOXC5Q00444 222 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 MOBPQ13875 183 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 EDDM3AQ14507 147 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 YIF1BQ5BJH7 314 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 GLYATL3Q5SZD4 288 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 HIST2H3PS2Q5TEC6 136 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 DEGS2Q6QHC5 323 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 HIST2H3AQ71DI3 136 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 RPS27LQ71UM5 84 aaKnown RBP2.11□□□□□ -2.07
CD44-235ENST00000532339 TRAPPC6BQ86SZ2 158 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 NAA40Q86UY6 237 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 OR2AE1Q8NHA4 323 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 RASSF5Q8WWW0 418 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 OR52E6Q96RD3 313 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 ABCB9Q9NP78 766 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 ACOT13Q9NPJ3 140 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 INIPQ9NRY2 104 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 SDHAF2Q9NX18 166 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 C21orf62Q9NYP8 219 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 SLC22A13Q9Y226 551 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 NUBP2Q9Y5Y2 271 aa2.11□□□□□ -2.07
CD44-235ENST00000532339 IGLV4-60A0A075B6I1 120 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 LINC00854A0A1B0GVQ3 168 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 A0A1B0GX12 115 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 LRCOL1A6NCL2 159 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 OR4C46A6NHA9 309 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 HMGN4O00479 90 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 SMIM24O75264 130 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 CST4P01036 141 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 NPPAP01160 153 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 GYPCP04921 128 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 REG1AP05451 166 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 PRKACBP22694 351 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 RPL18Q07020 188 aaKnown RBP2.1□□□□□ -2.07
CD44-235ENST00000532339 AESQ08117 197 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 MMDQ15546 238 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 SNCBQ16143 134 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 THOC7Q6I9Y2 204 aaKnown RBP2.1□□□□□ -2.07
CD44-235ENST00000532339 UNQ5815/PRO19632Q6UWF5 114 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 FAM131AQ6UXB0 335 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 LRRC34Q8IZ02 419 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 GAPTQ8N292 157 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 LINC00337Q8N6G1 96 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 SLC25A29Q8N8R3 303 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 SPANXA2-OT1Q8N9U9 137 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 OR5P3Q8WZ94 311 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 RBPMSQ93062 196 aaKnown RBP2.1□□□□□ -2.07
CD44-235ENST00000532339 OR10C1Q96KK4 312 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 TMEM14BQ9NUH8 114 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 C1orf109Q9NX04 203 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 CYB5R1Q9UHQ9 305 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 ENOPH1Q9UHY7 261 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 ANGPT4Q9Y264 503 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 CBY1Q9Y3M2 126 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 ORC6Q9Y5N6 252 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 MPC1Q9Y5U8 109 aa2.1□□□□□ -2.07
CD44-235ENST00000532339 TRGV10A0A0A0MS01 117 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms