RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ADIRFQ15847 76 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 TMEM219Q86XT9 240 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 LRRC75A-AS1Q8N1F1 130 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 FAM24BQ8N5W8 94 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 FAM110DQ8TAY7 271 aaPredicted RBP16.26■□□□□ 0.19
VPS28-209ENST00000528142 PAXXQ9BUH6 204 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 OR51M1Q9H341 326 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 MOB4Q9Y3A3 225 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 LINC01548A6NM66 108 aa16.25■□□□□ 0.19
VPS28-209ENST00000528142 F8W735 103 aaPredicted RBP16.25■□□□□ 0.19
VPS28-209ENST00000528142 AMY1AP04745 511 aa16.25■□□□□ 0.19
VPS28-209ENST00000528142 PYYP10082 97 aa16.25■□□□□ 0.19
VPS28-209ENST00000528142 UBE2L3P68036 154 aaKnown RBP16.25■□□□□ 0.19
VPS28-209ENST00000528142 SSX3Q99909 188 aa16.25■□□□□ 0.19
VPS28-209ENST00000528142 THYN1Q9P016 225 aa16.25■□□□□ 0.19
VPS28-209ENST00000528142 PDZD2O15018 2839 aa16.25■□□□□ 0.19
VPS28-209ENST00000528142 SH2D7A6NKC9 451 aaPredicted RBP16.24■□□□□ 0.19
VPS28-209ENST00000528142 CRYBA1P05813 215 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 RD3LP0DJH9 198 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 MFAP4P55083 255 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 RNF212Q495C1 297 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 FXYD5Q96DB9 178 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 S4R3C0 116 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 NAV2Q8IVL1 2488 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 CSMD1Q96PZ7 3565 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 GGTLC3B5MD39 225 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 FABP1P07148 127 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 FOLR2P14207 255 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 UNQ5815/PRO19632Q6UWF5 114 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 STXBP6Q8NFX7 210 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 CTDSP1Q9GZU7 261 aa16.24■□□□□ 0.19
VPS28-209ENST00000528142 MRPL27Q9P0M9 148 aaKnown RBP16.24■□□□□ 0.19
VPS28-209ENST00000528142 TRBV20OR9-2A0A075B6H5 130 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 TRAV30A0A087WSZ9 112 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 OR2J3O76001 311 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 TOMM40O96008 361 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 LYZP61626 148 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 LINC01551Q86U37 167 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 TMEM68Q96MH6 324 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 TMUB1Q9BVT8 246 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 C21orf62Q9NYP8 219 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 HIGD1AQ9Y241 93 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 UNC79Q9P2D8 2635 aa16.23■□□□□ 0.19
VPS28-209ENST00000528142 HIST1H1BP16401 226 aaKnown RBP16.22■□□□□ 0.19
VPS28-209ENST00000528142 YPEL3P61236 119 aaPredicted RBP16.22■□□□□ 0.19
VPS28-209ENST00000528142 ECSCRQ19T08 205 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 C16orf82Q7Z2V1 217 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 KRTAP1-3Q8IUG1 177 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 PRELID1Q9Y255 219 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 RNF223E7ERA6 249 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 CLDN34H7C241 214 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 GNG7O60262 68 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 ELOBQ15370 118 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 ZNF343Q6P1L6 599 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 FBXL7Q9UJT9 491 aa16.22■□□□□ 0.19
VPS28-209ENST00000528142 HECTD1Q9ULT8 2610 aa16.21■□□□□ 0.19
VPS28-209ENST00000528142 ITPR2Q14571 2701 aa16.21■□□□□ 0.19
VPS28-209ENST00000528142 A6NDX4 124 aa16.21■□□□□ 0.19
VPS28-209ENST00000528142 J3QLI3 93 aa16.21■□□□□ 0.19
VPS28-209ENST00000528142 RAB5AP20339 215 aa16.21■□□□□ 0.19
VPS28-209ENST00000528142 SUMO1P63165 101 aaKnown RBP16.21■□□□□ 0.19
VPS28-209ENST00000528142 ZNF491Q8N8L2 437 aa16.21■□□□□ 0.19
VPS28-209ENST00000528142 MAPK1IP1LQ8NDC0 245 aa16.21■□□□□ 0.19
VPS28-209ENST00000528142 ABCA1O95477 2261 aa16.2■□□□□ 0.18
VPS28-209ENST00000528142 TRBV9A0A0B4J1U6 114 aa16.2■□□□□ 0.18
VPS28-209ENST00000528142 G3V318 75 aa16.2■□□□□ 0.18
VPS28-209ENST00000528142 CRYBB3P26998 211 aa16.2■□□□□ 0.18
VPS28-209ENST00000528142 FCGR2BP31994 310 aaPredicted RBP16.2■□□□□ 0.18
VPS28-209ENST00000528142 SLC25A39Q9BZJ4 359 aaPredicted RBP16.2■□□□□ 0.18
VPS28-209ENST00000528142 WI2-2373I1.2A0A1W2PRP0 233 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 H3BUX3 64 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 TGFAP01135 160 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 GP9P14770 177 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 Q5PR19 223 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 VN1R17PQ8TDU5 208 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 Q8WTZ3 238 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 ELOVL1Q9BW60 279 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 CRIP2P52943 208 aaPredicted RBP16.19■□□□□ 0.18
VPS28-209ENST00000528142 Q56UQ5 140 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 C19orf54Q5BKX5 351 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 C2CD4CQ8TF44 421 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 TXN2Q99757 166 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 URGCP-MRPS24S4R325 110 aa16.19■□□□□ 0.18
VPS28-209ENST00000528142 PGPEP1LA6NFU8 196 aa16.18■□□□□ 0.18
VPS28-209ENST00000528142 C9JCJ5 164 aa16.18■□□□□ 0.18
VPS28-209ENST00000528142 IGHV4-31P0DP07 118 aa16.18■□□□□ 0.18
VPS28-209ENST00000528142 MYCNOSP40205 109 aa16.18■□□□□ 0.18
VPS28-209ENST00000528142 RPL35P42766 123 aaKnown RBP16.18■□□□□ 0.18
VPS28-209ENST00000528142 LEMD1Q68G75 181 aa16.18■□□□□ 0.18
VPS28-209ENST00000528142 MBD6Q96DN6 1003 aa16.18■□□□□ 0.18
VPS28-209ENST00000528142 RNF125Q96EQ8 232 aa16.18■□□□□ 0.18
VPS28-209ENST00000528142 IGHV3-23P01764 117 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 CXCL1P09341 107 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 LY6EQ16553 131 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 ZNF329Q86UD4 541 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 OCC1Q8TAD7 63 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 ANAPC16Q96DE5 110 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 SHANK2-AS3Q9BTD1 123 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 AURKAIP1Q9NWT8 199 aaPredicted RBP16.17■□□□□ 0.18
VPS28-209ENST00000528142 TMEM14CQ9P0S9 112 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms