RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 TRAV9-2A0A087WT02 112 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 LINC00614P0C842 121 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 SNRPD3P62318 126 aaKnown RBP11.38□□□□□ -0.59
SYNPO-205ENST00000522122 SPATA31B1PQ5VZV4 182 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 TSKUQ8WUA8 353 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 TRAV5A0A0B4J249 113 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 FABP5P3A8MUU1 101 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 C9JCJ5 164 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 ZNF124Q15973 351 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 C10orf55Q5SWW7 151 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 MGST2Q99735 147 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 ZNF585BQ52M93 769 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 MRPL52Q86TS9 123 aaKnown RBP11.37□□□□□ -0.59
SYNPO-205ENST00000522122 RNASE6Q93091 150 aaKnown RBP11.37□□□□□ -0.59
SYNPO-205ENST00000522122 PSG8Q9UQ74 426 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-205ENST00000522122 LINC00473A8K010 186 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 PPP1R17O96001 155 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 AMMECR1LQ6DCA0 310 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 NEUROG1Q92886 237 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 ZNF256Q9Y2P7 627 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-205ENST00000522122 PFN1P07737 140 aaKnown RBP11.37□□□□□ -0.59
SYNPO-205ENST00000522122 C19orf54Q5BKX5 351 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 CLEC19AQ6UXS0 136 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 ZNF664Q8N3J9 261 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 FOXC2Q99958 501 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 C2orf16Q68DN1 1984 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 ASIPP42127 132 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 NIT1Q86X76 327 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 COQ2Q96H96 371 aa11.37□□□□□ -0.59
SYNPO-205ENST00000522122 TRAV3A0A0B4J244 114 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 ARL6IP6Q8N6S5 226 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 IGKV3-20P01619 116 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 TNFRSF14Q92956 283 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 KRTAP27-1Q3LI81 207 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 IGHV3OR16-12A0A075B7B8 117 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 MDS2Q8NDY4 140 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 NUDT10Q8NFP7 164 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 NUDT11Q96G61 164 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 RAX2Q96IS3 184 aa11.36□□□□□ -0.59
SYNPO-205ENST00000522122 A8MWP6 167 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 LYNX1G3V0Z9 82 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 TNFSF13O75888 250 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 LYNX1P0DP58 116 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 NTF4P34130 210 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 C8orf46Q8TAG6 207 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 SCGB3A1Q96QR1 104 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 A0A0G2JLM5 398 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 GFRA3O60609 400 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 CD24P25063 80 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 TMEM170BQ5T4T1 132 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 ASCL2Q99929 193 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 SLC25A15Q9Y619 301 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 C15orf62A8K5M9 175 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 ATP5L2Q7Z4Y8 100 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 LY96Q9Y6Y9 160 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 DOCK10Q96BY6 2186 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 USF3Q68DE3 2245 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 ABCA4P78363 2273 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 CEACAM4O75871 244 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 COX6B1P14854 86 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 PRSS8Q16651 343 aa11.35□□□□□ -0.59
SYNPO-205ENST00000522122 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-205ENST00000522122 TIMM23O14925 209 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 IGKV1-39P01597 117 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 IGKV1D-39P04432 117 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 LINC00205P59089 165 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 TMEM256Q8N2U0 113 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 CYYR1Q96J86 154 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 ADIPOQQ15848 244 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 Q8NFD4 153 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 LY6G6EA0A0G2JKS1 128 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 CIRBPQ14011 172 aaKnown RBP11.34□□□□□ -0.59
SYNPO-205ENST00000522122 SLC50A1Q9BRV3 221 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 U3KQA8 63 aa11.34□□□□□ -0.59
SYNPO-205ENST00000522122 MED13LQ71F56 2210 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 TMEM131Q92545 1883 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 MLNRO43193 412 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 GEMIN7Q9H840 131 aaKnown RBP11.33□□□□□ -0.6
SYNPO-205ENST00000522122 DOCK11Q5JSL3 2073 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 DKK1O94907 266 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 RRN3P1Q2M238 152 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 MBNL3Q9NUK0 354 aaKnown RBP11.33□□□□□ -0.6
SYNPO-205ENST00000522122 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.33□□□□□ -0.6
SYNPO-205ENST00000522122 TYMSP04818 313 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.33□□□□□ -0.6
SYNPO-205ENST00000522122 HBDP02042 147 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 TMEM167AQ8TBQ9 72 aa11.33□□□□□ -0.6
SYNPO-205ENST00000522122 CENPVQ7Z7K6 275 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-205ENST00000522122 CHCHD1Q96BP2 118 aaKnown RBP11.32□□□□□ -0.6
SYNPO-205ENST00000522122 PPBPP02775 128 aa11.32□□□□□ -0.6
SYNPO-205ENST00000522122 HAPLN4Q86UW8 402 aa11.32□□□□□ -0.6
SYNPO-205ENST00000522122 DUX5Q96PT3 197 aa11.32□□□□□ -0.6
SYNPO-205ENST00000522122 UBE2L6O14933 153 aa11.32□□□□□ -0.6
SYNPO-205ENST00000522122 TMEM200BQ69YZ2 307 aa11.32□□□□□ -0.6
SYNPO-205ENST00000522122 LEPP41159 167 aa11.32□□□□□ -0.6
SYNPO-205ENST00000522122 IGKV1D-17A0A075B6S4 117 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 OR5AN1Q8NGI8 311 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 C19orf67A6NJJ6 358 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 H7C1H1 209 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms