RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 COX11Q9Y6N1 276 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 DNAJC13O75165 2243 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 IGHV1-3A0A0C4DH29 117 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 FAM236DA0A1B0GTK5 79 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 A0A1W2PPV9 198 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 FAM236CP0DP71 79 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 LAGE3Q14657 143 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 MRPL23Q16540 153 aaKnown RBP7.34□□□□□ -1.23
VCAN-208ENST00000512590 MARVELD1Q9BSK0 173 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 UQCR10Q9UDW1 63 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 A0A1W2PPI3 338 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 DUX4L9Q6RFH8 374 aaPredicted RBP7.34□□□□□ -1.23
VCAN-208ENST00000512590 LY6G5BQ8NDX9 201 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 ZNRF2Q8NHG8 242 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 CHAC1Q9BUX1 264 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 CCDC88AQ3V6T2 1871 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 CHD2O14647 1828 aaKnown RBP7.34□□□□□ -1.23
VCAN-208ENST00000512590 ATP5G1P05496 136 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 ATP5G3P48201 142 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 ZNF138P52744 262 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 UBE2D3P61077 147 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 RPL23P62829 140 aaKnown RBP7.34□□□□□ -1.23
VCAN-208ENST00000512590 DERL1Q9BUN8 251 aa7.34□□□□□ -1.23
VCAN-208ENST00000512590 IGHV4-4A0A075B6R2 117 aa7.34□□□□□ -1.24
VCAN-208ENST00000512590 IGKV1D-16P01601 117 aa7.34□□□□□ -1.24
VCAN-208ENST00000512590 IGHV1-8P0DP01 117 aa7.34□□□□□ -1.24
VCAN-208ENST00000512590 SPINK13Q1W4C9 94 aa7.34□□□□□ -1.24
VCAN-208ENST00000512590 DMRT1Q9Y5R6 373 aa7.34□□□□□ -1.24
VCAN-208ENST00000512590 hDV102S1A0JD36 115 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 DPRXA6NFQ7 191 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 CRYGSP22914 178 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 COL8A2P25067 703 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 NBL1P41271 181 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 A0A1B0GW64 132 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 SH2D6Q7Z4S9 175 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 FAM19A2Q8N3H0 131 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 PARD6GQ9BYG4 376 aaPredicted RBP7.33□□□□□ -1.24
VCAN-208ENST00000512590 C14orf132Q9NPU4 83 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 KLK9Q9UKQ9 250 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 TRAV8-3A0A0A6YYJ7 113 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 LY6HO94772 140 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 DKK1O94907 266 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 IFITM2Q01629 132 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 TRPT1Q86TN4 253 aaKnown RBP7.33□□□□□ -1.24
VCAN-208ENST00000512590 ODF3L1Q8IXM7 274 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 C8orf49Q96NF6 230 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 SPXQ9BT56 116 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 GGACTQ9BVM4 153 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 KLF2Q9Y5W3 355 aaPredicted RBP7.33□□□□□ -1.24
VCAN-208ENST00000512590 RFNGQ9Y644 331 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 ALX3O95076 343 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 AGAP20933 346 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 FAM219BQ5XKK7 198 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 CSTL1Q9H114 145 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 IL36BQ9NZH7 164 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 V9GYH0 126 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 KDM3BQ7LBC6 1761 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 TMEM14DPA8MWL7 114 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 IGKCP01834 107 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 PPBPP02775 128 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 PRB4P10163 310 aaPredicted RBP7.33□□□□□ -1.24
VCAN-208ENST00000512590 TMEM170AQ8WVE7 144 aa7.33□□□□□ -1.24
VCAN-208ENST00000512590 IGHV4-28A0A0C4DH34 117 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 GYPEP15421 78 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 CFHR2P36980 270 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 C17orf98A8MV24 154 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 PRR30Q53SZ7 412 aaPredicted RBP7.32□□□□□ -1.24
VCAN-208ENST00000512590 TMEM200BQ69YZ2 307 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 MIR17HGQ75NE6 70 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 SPATA25Q9BR10 227 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 TMEM30AQ9NV96 361 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 RPUSD1Q9UJJ7 312 aaKnown RBP7.32□□□□□ -1.24
VCAN-208ENST00000512590 SIGLEC5O15389 551 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 HILS1P60008 231 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 RHOHQ15669 191 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 MEGF9Q9H1U4 602 aa7.32□□□□□ -1.24
VCAN-208ENST00000512590 TOGARAM1Q9Y4F4 1720 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 SHISA3A0PJX4 238 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 PEX11BO96011 259 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 FUSP35637 526 aaKnown RBP eCLIP7.31□□□□□ -1.24
VCAN-208ENST00000512590 KLF17Q5JT82 389 aaPredicted RBP7.31□□□□□ -1.24
VCAN-208ENST00000512590 DMKNQ6E0U4 476 aaPredicted RBP7.31□□□□□ -1.24
VCAN-208ENST00000512590 KLHDC2Q9Y2U9 406 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 ADAMTS7Q9UKP4 1686 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 SIGMAR1Q99720 223 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 MRPS18CQ9Y3D5 142 aaKnown RBP7.31□□□□□ -1.24
VCAN-208ENST00000512590 IGHV1-24A0A0C4DH33 117 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 A8MWV9 139 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 UBL5Q9BZL1 73 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 LHFPL6Q9Y693 200 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 ADMP35318 185 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 ZFAND6Q6FIF0 208 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 NOP10Q9NPE3 64 aaKnown RBP7.31□□□□□ -1.24
VCAN-208ENST00000512590 CHCHD2Q9Y6H1 151 aaPredicted RBP7.31□□□□□ -1.24
VCAN-208ENST00000512590 MYH9P35579 1960 aaKnown RBP7.31□□□□□ -1.24
VCAN-208ENST00000512590 XCL1P47992 114 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 FOXG1P55316 489 aaPredicted RBP7.31□□□□□ -1.24
VCAN-208ENST00000512590 RNF5Q99942 180 aa7.31□□□□□ -1.24
VCAN-208ENST00000512590 RGPD1P0DJD0 1748 aa7.3□□□□□ -1.24
VCAN-208ENST00000512590 RGPD8O14715 1765 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms