RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TALDO1P37837 337 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 ETV6P41212 452 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 NKX2-1P43699 371 aaPredicted RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 RPL27AP46776 148 aaKnown RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 RORCP51449 518 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 AP2S1P53680 142 aaPredicted RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 CLDN12P56749 244 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 NUTF2P61970 127 aaKnown RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 LGALS9BQ3B8N2 356 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 IDNKQ5T6J7 187 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 HES5Q5TA89 166 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 SFXN4Q6P4A7 337 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 CFAP161Q6P656 301 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 CNIH2Q6PI25 160 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 PLET1Q6UQ28 207 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 KCTD9Q7L273 389 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 SPATA12Q7Z6I5 190 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 TPRA1Q86W33 373 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 GDPD1Q8N9F7 314 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 OR5AP2Q8NGF4 316 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 ZNF502Q8TBZ5 544 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 LGALS14Q8TCE9 139 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 ACOT12Q8WYK0 555 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 FAM3DQ96BQ1 224 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 SLC25A38Q96DW6 304 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 OR10C1Q96KK4 312 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 TMEM56Q96MV1 263 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 SOSTQ9BQB4 213 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 GINS3Q9BRX5 216 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 COMMD5Q9GZQ3 224 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 SRRQ9GZT4 340 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 ZNF430Q9H8G1 570 aaPredicted RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 PLGRKTQ9HBL7 147 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 COMMD3Q9UBI1 195 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 AK3Q9UIJ7 227 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 RBMX2Q9Y388 322 aaKnown RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 V9GY05 133 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 LRP1Q07954 4544 aaKnown RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 TRAV10A0A0B4J240 114 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 PIGBOS1A0A0B4J2F0 54 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 IGKV1-6A0A0C4DH72 117 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 ZNF320A2RRD8 509 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 IZUMO1RA6ND01 250 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 IFITM5A6NNB3 132 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 SRRM4A7MD48 611 aaKnown RBP2.79□□□□□ -1.96
USP54-217ENST00000498213 INS-IGF2F8WCM5 200 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 MFNGO00587 321 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 NUPL2O15504 423 aaKnown RBP2.79□□□□□ -1.96
USP54-217ENST00000498213 TGOLN2O43493 480 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 B3GALNT1O75752 331 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 ATG12O94817 140 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 TRBV12-3P01733 135 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 SAA1P0DJI8 122 aaPredicted RBP2.79□□□□□ -1.96
USP54-217ENST00000498213 ELK1P19419 428 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 RAB3BP20337 219 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 NPY1RP25929 384 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 CBX5P45973 191 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 TMEM50BP56557 158 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 ERVK-16P61578 105 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 PNRC1Q12796 327 aaPredicted RBP2.79□□□□□ -1.96
USP54-217ENST00000498213 ZNF846Q147U1 533 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 OXA1LQ15070 435 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 RNF212Q495C1 297 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 C1orf134Q5TEV5 83 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 HACD4Q5VWC8 232 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 SPATA31B1PQ5VZV4 182 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 PVRIGQ6DKI7 326 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 LPCAT3Q6P1A2 487 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 SH2D6Q7Z4S9 175 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 HOGA1Q86XE5 327 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 CROCCP3Q8IVE0 287 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 DUSP18Q8NEJ0 188 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 OR10R2Q8NGX6 335 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 OR1P1Q8NH06 330 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 SETD6Q8TBK2 473 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 LSM10Q969L4 123 aaKnown RBP2.79□□□□□ -1.96
USP54-217ENST00000498213 NARS2Q96I59 477 aaKnown RBP2.79□□□□□ -1.96
USP54-217ENST00000498213 ARHGAP5-AS1Q96IT6 56 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 CLCC1Q96S66 551 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 RARRES2Q99969 163 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 PECRQ9BY49 303 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 WFDC10AQ9H1F0 79 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 RPS10P5Q9NQ39 176 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 ZNF581Q9P0T4 197 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 OR1A1Q9P1Q5 309 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 MLXQ9UH92 298 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 PRNDQ9UKY0 176 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 TBC1D24Q9ULP9 559 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 ETV7Q9Y603 341 aa2.79□□□□□ -1.96
USP54-217ENST00000498213 FSIP2Q5CZC0 6907 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 TRAV30A0A087WSZ9 112 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 ZNF705EA8MWA4 302 aaPredicted RBP2.78□□□□□ -1.96
USP54-217ENST00000498213 BET1O15155 118 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 SOCS1O15524 211 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 RGS5O15539 181 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 FCGR3BO75015 233 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 UPK1BO75841 260 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 OR2J3O76001 311 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 HLA-AP01891 365 aaKnown RBP2.78□□□□□ -1.96
USP54-217ENST00000498213 SERPINE2P07093 398 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms