RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CSN1S1P47710 185 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 LINC00322Q6ZN03 302 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-230ENST00000495090 LINC00696Q6ZRV3 163 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 NEGR1Q7Z3B1 354 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 LINC00305Q7Z4B0 112 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 ZCCHC24Q8N2G6 241 aaKnown RBP7.8□□□□□ -1.16
SYNE1-230ENST00000495090 FAM169BQ8N8A8 192 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 SARAFQ96BY9 339 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 AP5S1Q9NUS5 200 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 CFAP54Q96N23 3096 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 C22orf46C9J442 243 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 C1orf185Q5T7R7 199 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 ZNF833PQ6ZTB9 187 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 RBMXL3Q8N7X1 1067 aaKnown RBP7.8□□□□□ -1.16
SYNE1-230ENST00000495090 TEX45Q8NA69 505 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 OR10W1Q8NGF6 305 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 OR5A1Q8NGJ0 315 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 OR9G4Q8NGQ1 327 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 OR1B1Q8NGR6 318 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 OR10AG1Q8NH19 301 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 AP1S3Q96PC3 154 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 TMUB1Q9BVT8 246 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 DEFB127Q9H1M4 99 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 RPUSD1Q9UJJ7 312 aaKnown RBP7.8□□□□□ -1.16
SYNE1-230ENST00000495090 FZR1Q9UM11 496 aa7.8□□□□□ -1.16
SYNE1-230ENST00000495090 IGHV3OR15-7A0A075B7D8 119 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 AGFG2O95081 481 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 APOA2P02652 100 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 TCRAP04437 139 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 SSBP2P81877 361 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-230ENST00000495090 HSD52Q0P140 79 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 OR5AN1Q8NGI8 311 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 VSTM2AQ8TAG5 236 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 TMEM167AQ8TBQ9 72 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 NPIPB3Q92617 1050 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 FNDC4Q9H6D8 234 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-230ENST00000495090 DKK4Q9UBT3 224 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 DNAJC13O75165 2243 aa7.79□□□□□ -1.16
SYNE1-230ENST00000495090 OVOL3O00110 214 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 SAP30O75446 220 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 GATA4P43694 442 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 LGALS9BQ3B8N2 356 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 LGALS9CQ6DKI2 356 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 PVRIGQ6DKI7 326 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 BOD1L2Q8IYS8 172 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 OR10X1Q8NGY0 326 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 HARBI1Q96MB7 349 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 TRGV9Q99603 122 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 SIT1Q9Y3P8 196 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 IGHV1-18A0A0C4DH31 117 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 A0A1B0GUT8 65 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 C9orf172C9J069 976 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 PPIAL4DF5H284 164 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 CRYGCP07315 174 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 GP9P14770 177 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 HOXB4P17483 251 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-230ENST00000495090 CD24P25063 80 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 ZNF137PP52743 207 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 PLP1P60201 277 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 RIGQ13278 110 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 Q6AWC8 147 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 Q86TA4 180 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 RPRMLQ8N4K4 120 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 OR4X2Q8NGF9 303 aa7.78□□□□□ -1.16
SYNE1-230ENST00000495090 WDFY3Q8IZQ1 3526 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 COL8A1P27658 744 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 WT1-ASQ06250 92 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 PSMG4Q5JS54 123 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 FA2HQ7L5A8 372 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 MOGAT3Q86VF5 341 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 OR2K2Q8NGT1 345 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 DSCAML1Q8TD84 2053 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 FER1L6-AS2Q96M78 137 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 JMJD8Q96S16 334 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 COL25A1Q9BXS0 654 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-230ENST00000495090 Q9H3A6 140 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 OTORQ9NRC9 128 aa7.77□□□□□ -1.17
SYNE1-230ENST00000495090 EYSQ5T1H1 3165 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 A0A0G2JLM5 398 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 CGB1A6NKQ9 187 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 IGHG3P01860 377 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 SCGB1A1P11684 91 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 IGFBP4P22692 258 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 KIR2DL2P43627 348 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-230ENST00000495090 VHLLQ6RSH7 139 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 TMEM178AQ8NBL3 297 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 BLNKQ8WV28 456 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 JKAMPQ9P055 326 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 RABAC1Q9UI14 185 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 TANC2Q9HCD6 1990 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 A1L4Q6 167 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 SMAD7O15105 426 aaKnown RBP7.76□□□□□ -1.17
SYNE1-230ENST00000495090 ZNF138P52744 262 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 RIPPLY3P57055 190 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 RBPJQ06330 500 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 KIR3DS1Q14943 382 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 ADAMTSL5Q6ZMM2 481 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 ZNF493Q6ZR52 646 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 OR4C13Q8NGP0 309 aa7.76□□□□□ -1.17
SYNE1-230ENST00000495090 FLYWCH2Q96CP2 140 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms