RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SIPA1L1O43166 1804 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 AKAP11Q9UKA4 1901 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 VGLL3A8MV65 326 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 IDO1P14902 403 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 PHBP35232 272 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 CCR2P41597 374 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 KRTAP10-5P60370 271 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 TNFRSF9Q07011 255 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 RPL18Q07020 188 aaKnown RBP2.57□□□□□ -2
VPS13A-212ENST00000493341 GRINAQ7Z429 371 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 TRPM6Q9BX84 2022 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 LYRM2Q9NU23 88 aaPredicted RBP2.57□□□□□ -2
VPS13A-212ENST00000493341 SMPXQ9UHP9 88 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 SSR3Q9UNL2 185 aa2.57□□□□□ -2
VPS13A-212ENST00000493341 COL1A1P02452 1464 aaPredicted RBP2.56□□□□□ -2
VPS13A-212ENST00000493341 FABP5P3A8MUU1 101 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 PPP5D1E7EU14 171 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 H3BT86 120 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 MFSD11O43934 449 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 CREBL2O60519 120 aaPredicted RBP2.56□□□□□ -2
VPS13A-212ENST00000493341 IFNA10P01566 189 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 ZNF728P0DKX0 622 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 Q6Q795 121 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 OR13C4Q8NGS5 318 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 CMTM2Q8TAZ6 248 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 DNAJC9Q8WXX5 260 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 IMMP2LQ96T52 175 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 GOLGB1Q14789 3259 aaKnown RBP2.56□□□□□ -2
VPS13A-212ENST00000493341 A0A0J9YX75 114 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 A0A1W2PNM2 257 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 SIGLEC16A6NMB1 481 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 GPR31O00270 319 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 NDUFC2O95298 119 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 ATP5G3P48201 142 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 BPIFA4PQ86YQ2 179 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 PBDC1Q9BVG4 233 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 SLC35A3Q9Y2D2 325 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 FOCADQ5VW36 1801 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 MAST2Q6P0Q8 1798 aa2.56□□□□□ -2
VPS13A-212ENST00000493341 PLXNB1O43157 2135 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 UTRNP46939 3433 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 CDK5RAP2Q96SN8 1893 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 RBBP6Q7Z6E9 1792 aaKnown RBP2.55□□□□□ -2
VPS13A-212ENST00000493341 GNRH2O43555 120 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 IGLV6-57P01721 117 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 IGHV3-7P01780 117 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 CRHP06850 196 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 SPI1P17947 270 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 CD24P25063 80 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 MSNP26038 577 aaKnown RBP2.55□□□□□ -2
VPS13A-212ENST00000493341 RPL28P46779 137 aaKnown RBP2.55□□□□□ -2
VPS13A-212ENST00000493341 LCE1EQ5T753 118 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 OR51T1Q8NGJ9 327 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 MIXL1Q9H2W2 232 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 DOCK2Q92608 1830 aa2.55□□□□□ -2
VPS13A-212ENST00000493341 MYH2Q9UKX2 1941 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 TRAV4A0A0B4J268 109 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 G3V3Q6 166 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 H7C1C5 153 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 J3QRK9 145 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 BANF1O75531 89 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 C1QAP02745 245 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 IFI30P13284 250 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 KRTAP5-9P26371 169 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 LCN6P62502 163 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 Q6ZS52 159 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 OR10K1Q8NGX5 313 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 GPER1Q99527 375 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 PRO0461Q9UI25 63 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 TIMM9Q9Y5J7 89 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 PHIPQ8WWQ0 1821 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 A0A0J9YW62 118 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 IRGMA1A4Y4 181 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 C1orf196B1AJZ1 125 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 TRAPPC2LH3BP13 241 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 CTSGP08311 255 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 LGALS1P09382 135 aaKnown RBP2.54□□□□□ -2
VPS13A-212ENST00000493341 CCL5P13501 91 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 CASP1P29466 404 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 ALDH3A1P30838 453 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 GLRXP35754 106 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 EIF2B2P49770 351 aaKnown RBP2.54□□□□□ -2
VPS13A-212ENST00000493341 PIGPP57054 158 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 KRTAP12-2P59991 146 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 CDC42P60953 191 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 TFAMQ00059 246 aaKnown RBP2.54□□□□□ -2
VPS13A-212ENST00000493341 LYRM7Q5U5X0 104 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 CLVS1Q8IUQ0 354 aaPredicted RBP2.54□□□□□ -2
VPS13A-212ENST00000493341 ZNF439Q8NDP4 499 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 ACER3Q9NUN7 267 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 PTPRFP10586 1907 aa2.54□□□□□ -2
VPS13A-212ENST00000493341 MYH7P12883 1935 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 TRGV5A0A0B4J1U4 118 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 TRAV41A0A0B4J266 112 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 IGKV2-24A0A0C4DH68 120 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 A0A1W2PNN7 141 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 PPBPP02775 128 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 UCHL1P09936 223 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 GZMHP20718 246 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 S100A4P26447 101 aaKnown RBP2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms