RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 PSG1P11464 419 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 SAA4P35542 130 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 THSD7AQ9UPZ6 1657 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 TNFSF13O75888 250 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 DUTP33316 252 aaKnown RBP10.81□□□□□ -0.68
COL6A3-212ENST00000491769 RASL10AQ92737 203 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 RTBDNQ9BSG5 229 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-212ENST00000491769 RPUSD1Q9UJJ7 312 aaKnown RBP10.81□□□□□ -0.68
COL6A3-212ENST00000491769 SCN8AQ9UQD0 1980 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 LAMB2P55268 1798 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 FOXG1P55316 489 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-212ENST00000491769 SCRT1Q9BWW7 348 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 SPCS1Q9Y6A9 102 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 RHPN1-AS1Q9BWJ2 59 aa10.81□□□□□ -0.68
COL6A3-212ENST00000491769 NHP2Q9NX24 153 aaKnown RBP10.81□□□□□ -0.68
COL6A3-212ENST00000491769 FAM223BA6NKX1 122 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 LINC01619G3V211 115 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 FAM223AQ8IWN6 122 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 XCL2Q9UBD3 114 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 OOSP1A8MZH6 123 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 LINC00271P0C7V0 271 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 CR1LQ2VPA4 569 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 IGFL4Q6B9Z1 124 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 TMEM126AQ9H061 195 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 EXOC3-AS1Q8N2X6 119 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 LINC00587B1AMM8 73 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 NDUFS8O00217 210 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 IGKCP01834 107 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 ERVH48-1M5A8F1 160 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 C5orf64Q2M2E5 130 aa10.8□□□□□ -0.68
COL6A3-212ENST00000491769 BUB1B-PAK6H3BSN5 160 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 OVOL3O00110 214 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 LY75O60449 1722 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 HIST1H4AP62805 103 aaKnown RBP10.79□□□□□ -0.68
COL6A3-212ENST00000491769 LAGE3Q14657 143 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 MPTX1A8MV57 137 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 HOXD3P31249 432 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-212ENST00000491769 APOC4P55056 127 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 CD200R1LQ6Q8B3 271 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 TRAV8-4A0A0B4J246 113 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 A0A1B0GTI1 187 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 NCR2O95944 276 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 ATP5L2Q7Z4Y8 100 aa10.79□□□□□ -0.68
COL6A3-212ENST00000491769 TRAV9-2A0A087WT02 112 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 SSBP2P81877 361 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-212ENST00000491769 ATXN8Q156A1 80 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 PAQR4Q8N4S7 273 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-212ENST00000491769 ZNF625Q96I27 306 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-212ENST00000491769 DLEC1Q9Y238 1755 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 FOXL1Q12952 345 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 DMRTA1Q5VZB9 504 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 C1orf122Q6ZSJ8 110 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 C9orf139Q6ZV77 190 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 NKAPP1Q8N9T2 125 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 ZFC3H1O60293 1989 aaKnown RBP10.78□□□□□ -0.68
COL6A3-212ENST00000491769 A6NNC1 897 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 HEPN1Q6WQI6 88 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 NABP1Q96AH0 204 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 MCRIP2Q9BUT9 160 aaKnown RBP10.78□□□□□ -0.68
COL6A3-212ENST00000491769 RTTNQ86VV8 2226 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 DDTP30046 118 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 ZNF138P52744 262 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 A0A087WWL8 130 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 PPBPP02775 128 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 CCL20P78556 96 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 ANXA2RQ3ZCQ2 193 aa10.78□□□□□ -0.68
COL6A3-212ENST00000491769 COL11A2P13942 1736 aaPredicted RBP10.77□□□□□ -0.68
COL6A3-212ENST00000491769 LYPD2Q6UXB3 125 aa10.77□□□□□ -0.68
COL6A3-212ENST00000491769 COL11A1P12107 1806 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-212ENST00000491769 K7ENP7 123 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 C18orf12Q96KH6 178 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 SPTBP11277 2137 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 SRRM5B3KS81 715 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 Q5BKY6 102 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 SUMO4Q6EEV6 95 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 A0A1B0GWJ7 208 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 VWC2LB2RUY7 222 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 EFNB3Q15768 340 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 PRR31Q5SQ13 230 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 ABCA7Q8IZY2 2146 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 CD177Q8N6Q3 437 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 Q8TAT8 98 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 SEC16AO15027 2179 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE12JA6NER3 117 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 H3BUT2 72 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 TCRAP04437 139 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 MST1P26927 711 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE1Q13065 139 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE4Q13068 117 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE5Q13069 117 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE13Q4V321 117 aa10.77□□□□□ -0.69
COL6A3-212ENST00000491769 ZNF48Q96MX3 618 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-212ENST00000491769 LINC00477Q96M19 166 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 AHCTF1Q8WYP5 2266 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 MYOFQ9NZM1 2061 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 GATA3P23771 443 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 SLC25A48Q6ZT89 311 aaKnown RBP10.76□□□□□ -0.69
COL6A3-212ENST00000491769 GGNQ86UU5 652 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 DAZ1Q9NQZ3 744 aaKnown RBP10.76□□□□□ -0.69
COL6A3-212ENST00000491769 CKAP5Q14008 2032 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms