RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 MANBALQ9NQG1 85 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 FUT9Q9Y231 359 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 CARHSP1Q9Y2V2 147 aaKnown RBP12.44□□□□□ -0.42
SYNE1-227ENST00000489156 IGHV3-21A0A0B4J1V1 117 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 LOC102723971A0A1B0GUV8 181 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 LINC01548A6NM66 108 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 F8W036 122 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 HMGB3O15347 200 aaKnown RBP12.43□□□□□ -0.42
SYNE1-227ENST00000489156 NDUFS6O75380 124 aaKnown RBP12.43□□□□□ -0.42
SYNE1-227ENST00000489156 MFAP4P55083 255 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 PLP1P60201 277 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 C9orf152Q5JTZ5 239 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 PRIMA1Q86XR5 153 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 CCDC28AQ8IWP9 274 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 VN1R17PQ8TDU5 208 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 TXN2Q99757 166 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 NPFFR1Q9GZQ6 430 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 VAX2Q9UIW0 290 aa12.43□□□□□ -0.42
SYNE1-227ENST00000489156 TRBV9A0A0B4J1U6 114 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 CRYBA1P05813 215 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 FCGR2BP31994 310 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-227ENST00000489156 TAS2R45P59539 299 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 ICAM4Q14773 271 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 C19orf54Q5BKX5 351 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 TMEM37Q8WXS4 190 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 TRAV41A0A0B4J266 112 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 APOC3P02656 99 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 ADCYAP1P18509 176 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 C21orf62Q9NYP8 219 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 TECRQ9NZ01 308 aaKnown RBP12.42□□□□□ -0.42
SYNE1-227ENST00000489156 ZNF580Q9UK33 172 aa12.42□□□□□ -0.42
SYNE1-227ENST00000489156 G3V318 75 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 COX7A2P2O60397 106 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 SCGB2A1O75556 95 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 BRI3O95415 125 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 IGKV1-17P01599 117 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 ARL14EPLP0DKL9 152 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 PQLC2Q6ZP29 291 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 NECAP1Q8NC96 275 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 PRSS22Q9GZN4 317 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 FBXL7Q9UJT9 491 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 ATRQ13535 2644 aa12.41□□□□□ -0.42
SYNE1-227ENST00000489156 EIF3GO75821 320 aaKnown RBP eCLIP12.4□□□□□ -0.42
SYNE1-227ENST00000489156 OR2J3O76001 311 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 NDUFB8O95169 186 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 YPEL3P61236 119 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-227ENST00000489156 RPL15P61313 204 aaKnown RBP12.4□□□□□ -0.42
SYNE1-227ENST00000489156 C10orf113Q5VZT2 155 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 Q6ZSV7 163 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 SVBPQ8N300 66 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 TMPRSS5Q9H3S3 457 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 ZNF702PQ9H963 129 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 AP4M1O00189 453 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 GNG7O60262 68 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 SRP19P09132 144 aaKnown RBP12.4□□□□□ -0.42
SYNE1-227ENST00000489156 RD3LP0DJH9 198 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 C8orf88P0DMB2 117 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 RXFP4Q8TDU9 374 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 TXNDC17Q9BRA2 123 aa12.4□□□□□ -0.42
SYNE1-227ENST00000489156 GAR1Q9NY12 217 aaKnown RBP12.4□□□□□ -0.42
SYNE1-227ENST00000489156 H3BUA1 57 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 PSG1P11464 419 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 RHOGP84095 191 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 MEF2BQ02080 365 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-227ENST00000489156 TMEM95Q3KNT9 176 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 SPATA31B1PQ5VZV4 182 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 PATE2Q6UY27 113 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 MIR17HGQ75NE6 70 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 IQCF2Q8IXL9 164 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 ATP6V0BQ99437 205 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 ZNF355PQ9NSJ1 428 aa12.39□□□□□ -0.43
SYNE1-227ENST00000489156 F8W735 103 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-227ENST00000489156 HYPMO75409 117 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 TOMM40O96008 361 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 GCHFRP30047 84 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 C15orf32Q32M92 178 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 TIGITQ495A1 244 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 SOHLH1Q5JUK2 328 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 TMEM167BQ9NRX6 74 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 FAM223BA6NKX1 122 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 DEFA5Q01523 94 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 Q56UQ5 140 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 FAM223AQ8IWN6 122 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 OR51G1Q8NGK1 321 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 SUN5Q8TC36 379 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 LINC00527Q9UJ94 153 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 ARL2-SNX15V9GYD0 113 aa12.38□□□□□ -0.43
SYNE1-227ENST00000489156 TRBV7-1A0A0A6YYK4 115 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 TMEM250H0YL14 139 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 PAGE4O60829 102 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 ORM2P19652 201 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 PPIFP30405 207 aaKnown RBP12.37□□□□□ -0.43
SYNE1-227ENST00000489156 LINC00305Q7Z4B0 112 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 Q8N2B8 174 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 STXBP6Q8NFX7 210 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 OR1B1Q8NGR6 318 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 ZNF502Q8TBZ5 544 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 DOK5Q9P104 306 aa12.37□□□□□ -0.43
SYNE1-227ENST00000489156 SNAPINO95295 136 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms