RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 LCE2BO14633 110 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 CD7P09564 240 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 FRMD6-AS1P0C7T7 363 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 NHLRC4P0CG21 123 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-208ENST00000484246 USF2Q15853 346 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-208ENST00000484246 OR8G2PQ6IF36 304 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 TMEM144Q7Z5S9 345 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 OR51G1Q8NGK1 321 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 GGACTQ9BVM4 153 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 NMES1Q9C002 83 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 DNAH9Q9NYC9 4486 aa11.88□□□□□ -0.51
UPF3A-208ENST00000484246 OR4C46A6NHA9 309 aa11.88□□□□□ -0.51
UPF3A-208ENST00000484246 CFDP00746 253 aaPredicted RBP11.88□□□□□ -0.51
UPF3A-208ENST00000484246 APOHP02749 345 aaPredicted RBP11.88□□□□□ -0.51
UPF3A-208ENST00000484246 IL4P05112 153 aa11.88□□□□□ -0.51
UPF3A-208ENST00000484246 HNRNPCP07910 306 aaKnown RBP eCLIP11.88□□□□□ -0.51
UPF3A-208ENST00000484246 METTL15P1P0C7V9 234 aa11.88□□□□□ -0.51
UPF3A-208ENST00000484246 NUP62P37198 522 aaPredicted RBP11.88□□□□□ -0.51
UPF3A-208ENST00000484246 OR10P1Q8NGE3 313 aa11.88□□□□□ -0.51
UPF3A-208ENST00000484246 RNF125Q96EQ8 232 aa11.88□□□□□ -0.51
UPF3A-208ENST00000484246 NARS2Q96I59 477 aaKnown RBP11.88□□□□□ -0.51
UPF3A-208ENST00000484246 IGHV3-49A0A0A0MS15 119 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 L7N2F9 121 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 GOSR2O14653 212 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 PVALBP20472 110 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-208ENST00000484246 VAMP2P63027 116 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 CYCSP99999 105 aaKnown RBP11.87□□□□□ -0.51
UPF3A-208ENST00000484246 ZNF90Q03938 601 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 RAB32Q13637 225 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 LINC00322Q6ZN03 302 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-208ENST00000484246 TCF24Q7RTU0 167 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 LSM5Q9Y4Y9 91 aaKnown RBP11.87□□□□□ -0.51
UPF3A-208ENST00000484246 SELENOKQ9Y6D0 94 aa11.87□□□□□ -0.51
UPF3A-208ENST00000484246 OR11H12B2RN74 326 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 CCNKO75909 580 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 P2RY1P47900 373 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 AKR1C1Q04828 323 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 LILRB2Q8N423 598 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 GLMPQ8WWB7 406 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 GRAMD2BQ96HH9 432 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 LYRM2Q9NU23 88 aaPredicted RBP11.86□□□□□ -0.51
UPF3A-208ENST00000484246 RABAC1Q9UI14 185 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 SLC45A2Q9UMX9 530 aa11.86□□□□□ -0.51
UPF3A-208ENST00000484246 IGHV3OR16-13A0A075B7E8 117 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 IGHV3-74A0A0B4J1X5 117 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 DEDDO75618 318 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 EIF2B2P49770 351 aaKnown RBP11.85□□□□□ -0.51
UPF3A-208ENST00000484246 H2BFSP57053 126 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 S100A10P60903 97 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 ARL16Q0P5N6 197 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 ODF3L2Q3SX64 289 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 C16orf54Q6UWD8 224 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 MGAT4CQ9UBM8 478 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 PFDN2Q9UHV9 154 aa11.85□□□□□ -0.51
UPF3A-208ENST00000484246 HELTA6NFD8 242 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 BUB3O43684 328 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 SSNA1O43805 119 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 DFFBO76075 338 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 CMC4P56277 68 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-208ENST00000484246 PAFAH1B2P68402 229 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 SBSPONQ8IVN8 264 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 WFDC10AQ9H1F0 79 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 TUBA4BQ9H853 241 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 NPVFQ9HCQ7 196 aa11.84□□□□□ -0.51
UPF3A-208ENST00000484246 IGHV3-66A0A0C4DH42 116 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 SIX6O95475 246 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 CAV2P51636 162 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 PLP1P60201 277 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 SELENOTP62341 195 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 VWC2Q2TAL6 325 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 C1orf194Q5T5A4 169 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 CYP2G1PQ6ZSU1 146 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 DEFB125Q8N687 156 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 TMEM252Q8N6L7 170 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 BPIFCQ8NFQ6 507 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 TM2D3Q9BRN9 247 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 MS4A6AQ9H2W1 248 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 SRD5A3Q9H8P0 318 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 ALG5Q9Y673 324 aa11.83□□□□□ -0.52
UPF3A-208ENST00000484246 IGSF23A1L1A6 192 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 FAM24AA6NFZ4 105 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 SULT1A1P50225 295 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 AP2S1P53680 142 aaPredicted RBP11.82□□□□□ -0.52
UPF3A-208ENST00000484246 LYZP61626 148 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 RRAS2P62070 204 aaPredicted RBP11.82□□□□□ -0.52
UPF3A-208ENST00000484246 SLC38A11Q08AI6 406 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 OR2F1Q13607 317 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 TEPPQ6URK8 271 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 STX12Q86Y82 276 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 STPG3Q8N7X2 389 aa11.82□□□□□ -0.52
UPF3A-208ENST00000484246 SMCO3A2RU48 225 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 RBMY1BA6NDE4 496 aaKnown RBP11.81□□□□□ -0.52
UPF3A-208ENST00000484246 RBMY1EA6NEQ0 496 aaKnown RBP11.81□□□□□ -0.52
UPF3A-208ENST00000484246 E5RGE8 158 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 H0YIZ8 118 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 K7EQG2 157 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 RBMY1DP0C7P1 496 aaKnown RBP11.81□□□□□ -0.52
UPF3A-208ENST00000484246 BCAP31P51572 246 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 RGS21Q2M5E4 152 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 TMEM182Q6ZP80 229 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms