RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 TET1Q8NFU7 2136 aa4.56□□□□□ -1.68
USF3-202ENST00000478658 SPTY2D1-AS1A0A0U1RR47 76 aa4.56□□□□□ -1.68
USF3-202ENST00000478658 A0A1W2PRD5 423 aa4.56□□□□□ -1.68
USF3-202ENST00000478658 J3KTA2 159 aa4.56□□□□□ -1.68
USF3-202ENST00000478658 K7ESM1 405 aa4.56□□□□□ -1.68
USF3-202ENST00000478658 FCMRO60667 390 aa4.56□□□□□ -1.68
USF3-202ENST00000478658 ZNF708P17019 499 aa4.56□□□□□ -1.68
USF3-202ENST00000478658 MUC4Q99102 2169 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 A0A1B0GVG6 124 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 EGR4Q05215 589 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 CCL14Q16627 93 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 CRIM1Q9NZV1 1036 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 ALPK2Q86TB3 2170 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 ZFP36L1Q07352 338 aaKnown RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 COL22A1Q8NFW1 1626 aaPredicted RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 IGKV1D-42A0A075B6H8 117 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 SMAD7O15105 426 aaKnown RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 ICAM4Q14773 271 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 SPSB2Q99619 263 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 MBNL3Q9NUK0 354 aaKnown RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 RFNGQ9Y644 331 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 ITGB4P16144 1822 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 TRGV1A0A0A0MS02 117 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 A0A1W2PR80 420 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 ZFP2Q6ZN57 461 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 NABP2Q9BQ15 211 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 RPP25Q9BUL9 199 aaKnown RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 TRAF4Q9BUZ4 470 aaPredicted RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 PILRBQ9UKJ0 227 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 MBD3L4A6NDZ8 208 aaPredicted RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 MBD3L3A6NE82 208 aaPredicted RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 MBD3L5A6NJ08 208 aaPredicted RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 IGLL5B9A064 214 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 SPINK8P0C7L1 97 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 GCHFRP30047 84 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 HAMPP81172 84 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 SP6Q3SY56 376 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 ACTL10Q5JWF8 245 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 RPRMLQ8N4K4 120 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 FAM181AQ8N9Y4 354 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 MBD3L2Q8NHZ7 208 aaPredicted RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 GLMPQ8WWB7 406 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 SCRT2Q9NQ03 307 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 MED12LQ86YW9 2145 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 CXCL2P19875 107 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 LY6EQ16553 131 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 SPINK9Q5DT21 86 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 THSD4Q6ZMP0 1018 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 CCL28Q9NRJ3 127 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 ADAMTS7Q9UKP4 1686 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 HELZP42694 1942 aaKnown RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 FAM186AA6NE01 2351 aa4.55□□□□□ -1.68
USF3-202ENST00000478658 TNRC6CQ9HCJ0 1690 aaKnown RBP4.55□□□□□ -1.68
USF3-202ENST00000478658 PRSS47A8MTI9 375 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 ZC3H3Q8IXZ2 948 aaKnown RBP4.54□□□□□ -1.68
USF3-202ENST00000478658 MED12Q93074 2177 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 A4D1N5 150 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 I3L3M4 83 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 M0R1W7 72 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 VSIG2Q96IQ7 327 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 B4DSR2 109 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 PROB1E7EW31 1015 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.54□□□□□ -1.68
USF3-202ENST00000478658 ODF3L1Q8IXM7 274 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 SNED1Q8TER0 1413 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 EML5Q05BV3 1969 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 GFRA4Q9GZZ7 299 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 A0A0G2JMZ2 1700 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 LRRC37A2A6NM11 1700 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 LRRC37AA6NMS7 1700 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 LTAP01374 205 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 ZIC1Q15915 447 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 LINC01356Q8N9X3 169 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 COX7A2LO14548 114 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 TGFAP01135 160 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 HLA-DMBP28068 263 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 CDAP32320 146 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 XAF1Q6GPH4 301 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 C7orf33Q8WU49 177 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 GATA6Q92908 595 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 UBE2D4Q9Y2X8 147 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 F5P12259 2224 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 H0YL77 283 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 GLI4P10075 376 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 ZNF250P15622 560 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 PSG7Q13046 419 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 PCOLCEQ15113 449 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 CLLU1OSQ5K130 101 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 NRTNQ99748 197 aa4.54□□□□□ -1.68
USF3-202ENST00000478658 FAM240AA0A1B0GVK7 77 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 HIGD1CA8MV81 97 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 IGKV4-1P06312 121 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 NKX2-6A6NCS4 301 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 RNF225M0QZC1 329 aaPredicted RBP4.53□□□□□ -1.68
USF3-202ENST00000478658 CELA3BP08861 270 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 ZNF134P52741 427 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 NMSQ5H8A3 153 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 ATP5EP2Q5VTU8 51 aa4.53□□□□□ -1.68
USF3-202ENST00000478658 TPRX1Q8N7U7 411 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms