RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TMEM167BQ9NRX6 74 aa11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 TRAV1-1A0A0B4J248 108 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 KRTDAPP60985 99 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 FAM120AOSQ5T036 256 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 SMDT1Q9H4I9 107 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 GGTLC3B5MD39 225 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 HIST1H1BP16401 226 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 CEACAM3P40198 252 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 LDLRAD2Q5SZI1 272 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 IBA57Q5T440 356 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 TMEM256Q8N2U0 113 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 C5orf52A6NGY3 159 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 NBEAP1P0C6P0 100 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 GPR183P32249 361 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 RPL29P47914 159 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 LGALS7P47929 136 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 USP24Q9UPU5 2620 aa11.01□□□□□ -0.65
CCDC88A-211ENST00000471947 TRAV40A0A0B4J280 105 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 LINC00587B1AMM8 73 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 G3V318 75 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 ISLRO14498 428 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 RPL15P61313 204 aaKnown RBP11□□□□□ -0.65
CCDC88A-211ENST00000471947 OR52E5Q8NH55 327 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 C17orf77Q96MU5 243 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 ZNF331Q9NQX6 463 aaPredicted RBP11□□□□□ -0.65
CCDC88A-211ENST00000471947 A0A1B0GW64 132 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 CXorf65A6NEN9 183 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 CX3CL1P78423 397 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 TCF24Q7RTU0 167 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 TMEM167AQ8TBQ9 72 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 HRNRQ86YZ3 2850 aaPredicted RBP11□□□□□ -0.65
CCDC88A-211ENST00000471947 SERTM2A0A1B0GWG4 89 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 GATCO43716 136 aaKnown RBP11□□□□□ -0.65
CCDC88A-211ENST00000471947 GGACTQ9BVM4 153 aa11□□□□□ -0.65
CCDC88A-211ENST00000471947 B4DEV8 164 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 CORTO00230 105 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 FBLN7Q53RD9 439 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 HIGD1AQ9Y241 93 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 S100A12P80511 92 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 TMEM177Q53S58 311 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 KHDC1LQ5JSQ8 128 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 BCL6BQ8N143 479 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 ZNF785A8K8V0 405 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 RPEL1Q2QD12 228 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 DYNAPQ8N1N2 210 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 C1orf159Q96HA4 380 aa10.99□□□□□ -0.65
CCDC88A-211ENST00000471947 NBR2O15453 112 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 VENTXO95231 258 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 C2orf83Q53S99 150 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 TEX38Q6PEX7 206 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 ATOH7Q8N100 152 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 FAM19A2Q8N3H0 131 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 PGLYRP4Q96LB8 373 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 CRISP2P16562 243 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 RPL19P84098 196 aaKnown RBP10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 HIST2H2BDQ6DRA6 164 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 PYY3Q5JQD4 70 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 TPTE2P1Q5T6R2 138 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 WFDC3Q8IUB2 231 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 OR5R1Q8NH85 324 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 WFDC12Q8WWY7 111 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 FAM168AQ92567 244 aa10.98□□□□□ -0.65
CCDC88A-211ENST00000471947 ZNF253O75346 499 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 PAX5Q02548 391 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 MRPL18Q9H0U6 180 aaKnown RBP10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 TCRBV4S1A1TA0A5B7 111 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 IGHV2-70P01814 119 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 SAA4P35542 130 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 Q8N7P7 452 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 NEU1Q99519 415 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 JKAMPQ9P055 326 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 K7EN84 100 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 CLEC19AQ6UXS0 136 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 CIARTQ8N365 385 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 ANAPC16Q96DE5 110 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 NOL4LQ96MY1 436 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 CCL19Q99731 98 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 ZNF257Q9Y2Q1 563 aa10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 LSM4Q9Y4Z0 139 aaKnown RBP10.97□□□□□ -0.65
CCDC88A-211ENST00000471947 M0QZ24 198 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 SRD5A1P18405 259 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 ADMP35318 185 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 TFPI2P48307 235 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 NDPQ00604 133 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 IQCJQ1A5X6 159 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 C11orf42Q8N5U0 333 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 DEFB104AQ8WTQ1 72 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 IGLC7A0M8Q6 106 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 F2Z2F3 143 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 S100A8P05109 93 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 CDX1P47902 265 aaPredicted RBP10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 ETFRF1Q6IPR1 90 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 TOMM20LQ6UXN7 152 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 PATE2Q6UY27 113 aa10.96□□□□□ -0.65
CCDC88A-211ENST00000471947 SEC14L6B5MCN3 397 aa10.96□□□□□ -0.66
CCDC88A-211ENST00000471947 RNASEKQ6P5S7 137 aaKnown RBP10.96□□□□□ -0.66
CCDC88A-211ENST00000471947 ZNF329Q86UD4 541 aa10.96□□□□□ -0.66
CCDC88A-211ENST00000471947 OR4F17Q8NGA8 305 aa10.96□□□□□ -0.66
CCDC88A-211ENST00000471947 FBXL7Q9UJT9 491 aa10.96□□□□□ -0.66
CCDC88A-211ENST00000471947 IGLV2-23P01705 113 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms