RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PITX3O75364 302 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 DUSP14O95147 198 aaKnown RBP2.89□□□□□ -1.95
HMGB1-207ENST00000468384 CPSF4O95639 269 aaKnown RBP2.89□□□□□ -1.95
HMGB1-207ENST00000468384 PGAM2P15259 253 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 SERPINB9P50453 376 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 CEBPGP53567 150 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 CDC42P60953 191 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 MAGOHP61326 146 aaKnown RBP2.89□□□□□ -1.95
HMGB1-207ENST00000468384 KISS1Q15726 138 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 ZSCAN26Q16670 478 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 RRN3P1Q2M238 152 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 WFDC10BQ8IUB3 73 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 ZNF555Q8NEP9 628 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 CHCHD10Q8WYQ3 142 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-207ENST00000468384 CCDC42Q96M95 316 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 MRPL20Q9BYC9 149 aaKnown RBP2.89□□□□□ -1.95
HMGB1-207ENST00000468384 OR51V1Q9H2C8 321 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 VAPAQ9P0L0 249 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 Q9UF83 564 aa2.89□□□□□ -1.95
HMGB1-207ENST00000468384 IGHV1OR15-1A0A075B7D0 117 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 A8MT66 165 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SMKR1H3BMG3 65 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 XKRYO14609 159 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 ATP8B1O43520 1251 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 PTTG1O95997 202 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 RBP1P09455 135 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 OCM2P0CE71 109 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 ATP6V1B2P21281 511 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 HSD11B1P28845 292 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SSTR5P35346 364 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 TAS2R60P59551 318 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 CXCL6P80162 114 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 MYL5Q02045 173 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 UNC119Q13432 240 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 RAB31Q13636 194 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 FLOT2Q14254 428 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 ARL6IP1Q15041 203 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 PSG5Q15238 335 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 MESTQ5EB52 335 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 RBM48Q5RL73 367 aaKnown RBP2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SLC25A30Q5SVS4 291 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 FAM19A1Q7Z5A9 133 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 ARRDC1Q8N5I2 433 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 Q8N976 141 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 RNF133Q8WVZ7 376 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 IFT81Q8WYA0 676 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SLC25A38Q96DW6 304 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 CMTM5Q96DZ9 223 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 ADTRPQ96IZ2 230 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 CEP19Q96LK0 163 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SCGB3A2Q96PL1 93 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SULT4A1Q9BR01 284 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 RHBDL2Q9NX52 303 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SNX24Q9Y343 169 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 GOLT1BQ9Y3E0 138 aa2.88□□□□□ -1.95
HMGB1-207ENST00000468384 SAMHD1Q9Y3Z3 626 aaKnown RBP2.88□□□□□ -1.95
HMGB1-207ENST00000468384 MIF4GDA9UHW6 222 aaKnown RBP2.87□□□□□ -1.95
HMGB1-207ENST00000468384 IBA57-AS1B1ANH7 110 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 F6UB75 175 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 K7EMT4 169 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 DNASE2O00115 360 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-207ENST00000468384 NME4O00746 187 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 ZNF207O43670 478 aaKnown RBP2.87□□□□□ -1.95
HMGB1-207ENST00000468384 TPST1O60507 370 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 FKBP6O75344 327 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 LYPLA1O75608 230 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-207ENST00000468384 RAB3DO95716 219 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 ORM1P02763 201 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 GYPCP04921 128 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 CSN2P05814 226 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 TCP1P17987 556 aaKnown RBP2.87□□□□□ -1.95
HMGB1-207ENST00000468384 G0S2P27469 103 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 NKX2-5P52952 324 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-207ENST00000468384 OR10A3P58181 314 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 MS4A2Q01362 244 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 BSXQ3C1V8 233 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 ZBED5Q49AG3 693 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 OR10J3Q5JRS4 329 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 TEX30Q5JUR7 227 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 C2orf66Q6UXQ4 117 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 PEX26Q7Z412 305 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 HS3ST5Q8IZT8 346 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 PFN4Q8NHR9 129 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 GTSF1Q8WW33 167 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 Q96M85 177 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 VGLL1Q99990 258 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 AGMATQ9BSE5 352 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 RHPN1-AS1Q9BWJ2 59 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 MS4A6AQ9H2W1 248 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 BCL2L10Q9HD36 194 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 SMPXQ9UHP9 88 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 V9GY05 133 aa2.87□□□□□ -1.95
HMGB1-207ENST00000468384 A0A087WUU8 490 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 MEIKINA0A087WXM9 373 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 A0A1W2PQL4 384 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-207ENST00000468384 GCGP01275 180 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 TBPP20226 339 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 HCCSP53701 268 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 SUB1P53999 127 aaKnown RBP eCLIP2.86□□□□□ -1.95
HMGB1-207ENST00000468384 CLDN12P56749 244 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms