RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 SP5Q6BEB4 398 aaPredicted RBP7.19□□□□□ -1.26
HPS4-209ENST00000466781 TEX43Q6ZNM6 134 aa7.19□□□□□ -1.26
HPS4-209ENST00000466781 NHP2Q9NX24 153 aaKnown RBP7.19□□□□□ -1.26
HPS4-209ENST00000466781 IGHV1-3A0A0C4DH29 117 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 ADMP35318 185 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 FOXF2Q12947 444 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 TMEM200BQ69YZ2 307 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 GLRX5Q86SX6 157 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 NRN1Q9NPD7 142 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 PIKFYVEQ9Y2I7 2098 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 TMEM238C9JI98 176 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 IGHV1-8P0DP01 117 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 TCF15Q12870 199 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 UBE2E2Q96LR5 201 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 CCL1P22362 96 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 ZNF876PQ49A33 203 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 SFTA2Q6UW10 78 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 NIT1Q86X76 327 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 USMG5Q96IX5 58 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 LYZL4Q96KX0 146 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 IGLV3-32A0A0A0MS00 114 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 TMEM178BH3BS89 294 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 LGALS1P09382 135 aaKnown RBP7.18□□□□□ -1.26
HPS4-209ENST00000466781 NHLRC3Q5JS37 347 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 ATP5L2Q7Z4Y8 100 aa7.18□□□□□ -1.26
HPS4-209ENST00000466781 PTPRZ1P23471 2315 aaPredicted RBP7.17□□□□□ -1.26
HPS4-209ENST00000466781 TBX6O95947 436 aaPredicted RBP7.17□□□□□ -1.26
HPS4-209ENST00000466781 TMEM190Q8WZ59 177 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 H3BUT2 72 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 HOXD3P31249 432 aaPredicted RBP7.17□□□□□ -1.26
HPS4-209ENST00000466781 DUTP33316 252 aaKnown RBP7.17□□□□□ -1.26
HPS4-209ENST00000466781 CD300EQ496F6 205 aaPredicted RBP7.17□□□□□ -1.26
HPS4-209ENST00000466781 EDA2RQ9HAV5 297 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 A0A0G2JNJ9 132 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 A0A1W2PRE2 83 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 VWC2LB2RUY7 222 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 CGB3P0DN86 165 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 PLSCR4Q9NRQ2 329 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 Q9UFV3 132 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 A0A087WWC5 75 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 FCN3O75636 299 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 RPL23P62829 140 aaKnown RBP7.17□□□□□ -1.26
HPS4-209ENST00000466781 C6orf226Q5I0X4 101 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 BMPERQ8N8U9 685 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 MDS2Q8NDY4 140 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 OR10W1Q8NGF6 305 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 CHCHD1Q96BP2 118 aaKnown RBP7.17□□□□□ -1.26
HPS4-209ENST00000466781 PLEKHB2Q96CS7 222 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 DERL1Q9BUN8 251 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 ERG28Q9UKR5 140 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 KIAA1671Q9BY89 1806 aa7.17□□□□□ -1.26
HPS4-209ENST00000466781 NPIPB5A8MRT5 1133 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 IFITM3Q01628 133 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 C9orf139Q6ZV77 190 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 OSTCQ9NRP0 149 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 SCN8AQ9UQD0 1980 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 APC2O95996 2303 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 IGKV1D-13A0A0B4J2D9 117 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 SRRM4A7MD48 611 aaKnown RBP7.16□□□□□ -1.26
HPS4-209ENST00000466781 IGKV1-13P0DP09 117 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 NDPQ00604 133 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 ZNF474Q6S9Z5 364 aaPredicted RBP7.16□□□□□ -1.26
HPS4-209ENST00000466781 OVOL2Q9BRP0 275 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 IGFBP3P17936 291 aaPredicted RBP7.16□□□□□ -1.26
HPS4-209ENST00000466781 LHFPL4Q7Z7J7 247 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 RNF5Q99942 180 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.16□□□□□ -1.26
HPS4-209ENST00000466781 MPTX1A8MV57 137 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 SEC11AP67812 179 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 LCN12Q6JVE5 192 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 SLC25A39Q9BZJ4 359 aaPredicted RBP7.16□□□□□ -1.26
HPS4-209ENST00000466781 CLDN16Q9Y5I7 305 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 NUP210Q8TEM1 1887 aaPredicted RBP7.16□□□□□ -1.26
HPS4-209ENST00000466781 LEPROTO15243 131 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 HIST1H4AP62805 103 aaKnown RBP7.16□□□□□ -1.26
HPS4-209ENST00000466781 EFNB3Q15768 340 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 LINC00114Q6XXX2 140 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 NR2C2APQ86WQ0 139 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 ANAPC10Q9UM13 185 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 CACNA1CQ13936 2221 aa7.16□□□□□ -1.26
HPS4-209ENST00000466781 A0A1B0GTI1 187 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 PSG1P11464 419 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 LINC00477Q96M19 166 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 PRDM13Q9H4Q3 707 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 LSM4Q9Y4Z0 139 aaKnown RBP7.15□□□□□ -1.26
HPS4-209ENST00000466781 CD55P08174 381 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 GZMBP10144 247 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 PRB4P10163 310 aaPredicted RBP7.15□□□□□ -1.26
HPS4-209ENST00000466781 Q5PR19 223 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 ZNF562Q6V9R5 426 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 PIP4P1Q86T03 277 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 DOCK6Q96HP0 2047 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 RNF223E7ERA6 249 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 SERF1AO75920 110 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 ZNF138P52744 262 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 Q6ZS92 163 aa7.15□□□□□ -1.26
HPS4-209ENST00000466781 ITGB1BP1O14713 200 aa7.15□□□□□ -1.27
HPS4-209ENST00000466781 DEFB130BP0DP73 79 aa7.15□□□□□ -1.27
HPS4-209ENST00000466781 DEFB130AP0DP74 79 aa7.15□□□□□ -1.27
HPS4-209ENST00000466781 GATA4P43694 442 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms