RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 IGHV3OR16-8A0A075B7F1 116 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 TRAV17A0A0B4J275 112 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 LOC107986453A0A1B0GWG9 222 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 RNASEK-C17orf49H0YIS7 233 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 M0R135 149 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 UPK2O00526 184 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 RER1O15258 196 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 IFNA7P01567 189 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 TTRP02766 147 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 TRGV3P03979 118 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 PET100P0DJ07 73 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 CSRP1P21291 193 aaKnown RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 CCL1P22362 96 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 TSPOP30536 169 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 RBP2P50120 134 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 TAS2R20P59543 309 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 GNG2P59768 71 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 INSL4Q14641 139 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 RSU1Q15404 277 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 SURF2Q15527 256 aaPredicted RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 KISS1Q15726 138 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 KCNJ8Q15842 424 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 LINC00303Q3SY05 128 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 RNASE10Q5GAN6 216 aaKnown RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 TMEM136Q6ZRR5 245 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 TMEM144Q7Z5S9 345 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 C20orf196Q8IYI0 205 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 LRRC18Q8N456 261 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 ZFP62Q8NB50 900 aaPredicted RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 TMEM229BQ8NBD8 167 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 OR51A4Q8NGJ6 313 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 OR5H6Q8NGV6 325 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 KLF14Q8TD94 323 aaPredicted RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 RNASEH2CQ8TDP1 164 aaKnown RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 ZNF431Q8TF32 576 aaPredicted RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 TNFAIP8L1Q8WVP5 186 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 APOBEC3DQ96AK3 386 aaPredicted RBP2.2□□□□□ -2.06
VPS41-210ENST00000462429 BORCS8Q96FH0 119 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 YPEL4Q96NS1 127 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 PHB2Q99623 299 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 GINS4Q9BRT9 223 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 KRTAP4-3Q9BYR4 195 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 CHST5Q9GZS9 411 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 METTL9Q9H1A3 318 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 HRASLSQ9HDD0 168 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 GPR84Q9NQS5 396 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 PLEKHJ1Q9NW61 149 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 FAM206AQ9NX38 181 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 PRR14LQ5THK1 2151 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 FREM3P0C091 2139 aa2.2□□□□□ -2.06
VPS41-210ENST00000462429 CACNA1CQ13936 2221 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 RANBP2P49792 3224 aaKnown RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 LAMA3Q16787 3333 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 CDH23Q9H251 3354 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 TRAV8-3A0A0A6YYJ7 113 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 TRGV5A0A0B4J1U4 118 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 A0A0D9SG52 128 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 A0A0J9YW62 118 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 PGPA6NDG6 321 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 HMSDA8MTL9 139 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 HMGB3O15347 200 aaKnown RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 PIN1P1O15428 100 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 FABP7O15540 132 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 CRTAPO75718 401 aaPredicted RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 NDUFB6O95139 128 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 IFNA21P01568 189 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 CRHP06850 196 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 CTXN2P0C2S0 81 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 SCGB1C2P0DMR2 95 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 RNASE2P10153 161 aaKnown RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 SPNP16150 400 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 ZNF708P17019 499 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 NFYAP23511 347 aaPredicted RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 PRTN3P24158 256 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 HTR2BP41595 481 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 RPS27P42677 84 aaKnown RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 SRP9P49458 86 aaKnown RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 CLDN12P56749 244 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 ARPC4P59998 168 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 EIF5AP63241 154 aaKnown RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 HIST1H3AP68431 136 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 GRK1Q15835 563 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 TMEM128Q5BJH2 165 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 HIST2H3PS2Q5TEC6 136 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 EIF5AL1Q6IS14 154 aaKnown RBP2.19□□□□□ -2.06
VPS41-210ENST00000462429 SPINT4Q6UDR6 99 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 GLIPR1L1Q6UWM5 242 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 IDO2Q6ZQW0 420 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 HIST2H3AQ71DI3 136 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 NAA40Q86UY6 237 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 Q8IYB0 196 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 PXT1Q8NFP0 134 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 OR8B12Q8NGG6 310 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 OR51T1Q8NGJ9 327 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 TERB2Q8NHR7 220 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 SCGB1C1Q8TD33 95 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 AQP3Q92482 292 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 PSMF1Q92530 271 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 MRAP2Q96G30 205 aa2.19□□□□□ -2.06
VPS41-210ENST00000462429 REEP6Q96HR9 211 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms