RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 PROK2Q9HC23 129 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 NDUFA4L2Q9NRX3 87 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 HAPLN4Q86UW8 402 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 A0A0G2JMM0 328 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 A0A1W2PPB8 328 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 LINC00473A8K010 186 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 KIR3DP1A8MWS1 328 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 WNT9BO14905 357 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF474Q6S9Z5 364 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-216ENST00000461872 SCGB1D4Q6XE38 83 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 ZGRF1Q86YA3 2104 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 MALRD1Q5VYJ5 2156 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 PGPEP1LA6NFU8 196 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 C17orf100A8MU93 164 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 IGLV1-44P01699 117 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 CD55P08174 381 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 Q6ZWC4 215 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 MUC15Q8N387 334 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 RNASE7Q9H1E1 156 aaKnown RBP5.77□□□□□ -1.49
SYNE1-216ENST00000461872 R4GN57 208 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 LILRA1O75019 489 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 APOHP02749 345 aaPredicted RBP5.77□□□□□ -1.49
SYNE1-216ENST00000461872 RNASE2P10153 161 aaKnown RBP5.77□□□□□ -1.49
SYNE1-216ENST00000461872 C20orf204Q6ZNR8 217 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 PGLYRP4Q96LB8 373 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 IGHV2-70DA0A0C4DH43 119 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 E9PLN8 166 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 TEX29Q8N6K0 151 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 NTF4P34130 210 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 TEX36Q5VZQ5 186 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 GOLT1AQ6ZVE7 132 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 PPP1R27Q86WC6 154 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 SGK494Q96LW2 274 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 GPHA2Q96T91 129 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 DPM3Q9P2X0 92 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 C15orf65H3BRN8 121 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 SRSF2Q01130 221 aaKnown RBP5.77□□□□□ -1.49
SYNE1-216ENST00000461872 CUL9Q8IWT3 2517 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 SNRPCP09234 159 aaKnown RBP5.77□□□□□ -1.49
SYNE1-216ENST00000461872 CDCP2Q5VXM1 449 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF833PQ6ZTB9 187 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 KAAG1Q9UBP8 84 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 SPCS1Q9Y6A9 102 aa5.77□□□□□ -1.49
SYNE1-216ENST00000461872 IGKV1D-33P01593 117 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 IGKV1-33P01594 117 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 FTH1P19P0C7X4 201 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 PRSS8Q16651 343 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 GFRALQ6UXV0 394 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF788Q6ZQV5 615 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 SYT8Q8NBV8 401 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 RNF125Q96EQ8 232 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 HES7Q9BYE0 225 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 H7C1H1 209 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 DEFB109BQ30KR1 87 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 CCL17Q92583 94 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF524Q96C55 264 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 H3BRM9 83 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 NDUFS8O00217 210 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 MOSP00540 346 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 CSN3P07498 182 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 SLC35B1P78383 322 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF329Q86UD4 541 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 FABP5P3A8MUU1 101 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 DPM2O94777 84 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 CD40P25942 277 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 FGFBP3Q8TAT2 258 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 KIR2DL4Q99706 377 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 PLA2G2EQ9NZK7 142 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 ANOS1P23352 680 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 LGALS9BQ3B8N2 356 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 LGALS9CQ6DKI2 356 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 Q86TA4 180 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF71Q9NQZ8 489 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-216ENST00000461872 IGLV3-9A0A075B6K5 115 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 K7EP13 123 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 RNF144BQ7Z419 303 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 FER1L6-AS1Q8NA97 138 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 IL4P05112 153 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 WNT10AQ9GZT5 417 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 KLF12Q9Y4X4 402 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 H0YJW9 148 aa5.76□□□□□ -1.49
SYNE1-216ENST00000461872 NBR2O15453 112 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 COX8AP10176 69 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 SRSF9Q13242 221 aaKnown RBP eCLIP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 IGFBPL1Q8WX77 278 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 NMUP48645 174 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 Q5PR19 223 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 SPANXN1Q5VSR9 72 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 SLC25A15Q9Y619 301 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 IGHV1-24A0A0C4DH33 117 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 FAM57AQ8TBR7 257 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 C21orf62Q9NYP8 219 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 MED13Q9UHV7 2174 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 APOBEC3AP31941 199 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 SRSF1Q07955 248 aaKnown RBP eCLIP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 SRSF6Q13247 344 aaKnown RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 LPAL2Q16609 132 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 MINOS1Q5TGZ0 78 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms