RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 NMBP08949 121 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 DTX1Q86Y01 620 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 SDHCQ99643 169 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 DEPPQ9NTK1 212 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 IGHV2-26A0A0B4J1V2 119 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 EFNB1P98172 346 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 FBLN7Q53RD9 439 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 PVRIGQ6DKI7 326 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 ASCL4Q6XD76 172 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 RNASE7Q9H1E1 156 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 LDLRAD4O15165 306 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 CDK2AP2O75956 126 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 CRIM1Q9NZV1 1036 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 DPRXA6NFQ7 191 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 YPEL1O60688 119 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 VENTXO95231 258 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 TMEM50AO95807 157 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 YPEL2Q96QA6 119 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 KLRD1Q13241 179 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 SLC50A1Q9BRV3 221 aa10.03□□□□□ -0.8
CCDC88A-207ENST00000436346 A0A0G2JNJ9 132 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 PARD6GQ9BYG4 376 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 Q9UFV3 132 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 SNAI2O43623 268 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 TMEM95Q3KNT9 176 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 CD200R1LQ6Q8B3 271 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 PINLYPA6NC86 204 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 S100A7L2Q5SY68 101 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 SSBP4Q9BWG4 385 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 IGHV3-64A0A075B6Q5 118 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 A0A1B0GV72 72 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 RTBDNQ9BSG5 229 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 LINC00527Q9UJ94 153 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 LHFPL4Q7Z7J7 247 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 PRADC1Q9BSG0 188 aa10.02□□□□□ -0.81
CCDC88A-207ENST00000436346 FN1P02751 2386 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 ACTL10Q5JWF8 245 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 DDTP30046 118 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 KIR3DL3Q8N743 410 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 ST6GALNAC6Q969X2 333 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 CST9LQ9H4G1 147 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 IGHV1-46P01743 117 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 CFHR1Q03591 330 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 CD8AP01732 235 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 IL36BQ9NZH7 164 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 CD59P13987 128 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 SSC4DQ8WTU2 575 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 MPTX1A8MV57 137 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 DUSP14O95147 198 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 APOMO95445 188 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 GFI1BQ5VTD9 330 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 BRD3OSQ6XYD6 125 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 FAM19A2Q8N3H0 131 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 ANKRD11Q6UB99 2663 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 TRGV1A0A0A0MS02 117 aa10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 MRPL14Q6P1L8 145 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-207ENST00000436346 IZUMO1RA6ND01 250 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 FXYD7P58549 80 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 OR10W1Q8NGF6 305 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 ADARB2-AS1A8MUL3 147 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 LINC01356Q8N9X3 169 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 PLPPR1Q8TBJ4 325 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 C14orf144Q96I85 54 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 B4DSR2 109 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 WBP1Q96G27 269 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 IMMP2LQ96T52 175 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 MBNL3Q9NUK0 354 aaKnown RBP10□□□□□ -0.81
CCDC88A-207ENST00000436346 RNF114Q9Y508 228 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 TRAV21A0A0B4J279 112 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 CD55P08174 381 aa10□□□□□ -0.81
CCDC88A-207ENST00000436346 TYMSP04818 313 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 ZFP36L1Q07352 338 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 PUSL1Q8N0Z8 303 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 ST6GALNAC3Q8NDV1 305 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 TRBV7-1A0A0A6YYK4 115 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 EFNA4P52798 201 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 NEUROG1Q92886 237 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 UPK2O00526 184 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 VWCEQ96DN2 955 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 PAX2Q02962 417 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 IGKV2-40A0A087WW87 121 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 IGKV2D-40P01614 121 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 UCP1P25874 307 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 ZNF600Q6ZNG1 722 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 TMEM86BQ8N661 226 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 IGLV3-12A0A075B6K2 115 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 TIMP3P35625 211 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 C18orf12Q96KH6 178 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 RIPPLY3P57055 190 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 TMEM200BQ69YZ2 307 aa9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 PEF1Q9UBV8 284 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-207ENST00000436346 SRSF1Q07955 248 aaKnown RBP eCLIP9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 ZNF672Q499Z4 452 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 CYSLTR1Q9Y271 337 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 A0A087WX48 190 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 PLNP26678 52 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 LCNL1Q6ZST4 164 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 OR2K2Q8NGT1 345 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 ATP5G3P48201 142 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 NDPQ00604 133 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms