RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 GPX4P36969 197 aaPredicted RBP13.99□□□□□ -0.17
SF3A1-202ENST00000411423 LYG2Q86SG7 212 aa13.99□□□□□ -0.17
SF3A1-202ENST00000411423 STPG3Q8N7X2 389 aa13.99□□□□□ -0.17
SF3A1-202ENST00000411423 PIGBOS1A0A0B4J2F0 54 aa13.98□□□□□ -0.17
SF3A1-202ENST00000411423 H3BP45 60 aa13.98□□□□□ -0.17
SF3A1-202ENST00000411423 CMC4P56277 68 aaPredicted RBP13.98□□□□□ -0.17
SF3A1-202ENST00000411423 ATP5IP56385 69 aaPredicted RBP13.98□□□□□ -0.17
SF3A1-202ENST00000411423 GSG1LQ6UXU4 331 aa13.98□□□□□ -0.17
SF3A1-202ENST00000411423 OR4D5Q8NGN0 318 aa13.98□□□□□ -0.17
SF3A1-202ENST00000411423 C7orf50Q9BRJ6 194 aaKnown RBP13.98□□□□□ -0.17
SF3A1-202ENST00000411423 CSTL1Q9H114 145 aa13.98□□□□□ -0.17
SF3A1-202ENST00000411423 PAIP2BQ9ULR5 123 aaKnown RBP13.98□□□□□ -0.17
SF3A1-202ENST00000411423 LCE6AA0A183 80 aa13.97□□□□□ -0.17
SF3A1-202ENST00000411423 BUB3O43684 328 aa13.97□□□□□ -0.17
SF3A1-202ENST00000411423 ZNF688P0C7X2 276 aa13.97□□□□□ -0.17
SF3A1-202ENST00000411423 POLR2GP62487 172 aaKnown RBP eCLIP13.97□□□□□ -0.17
SF3A1-202ENST00000411423 ID3Q02535 119 aa13.97□□□□□ -0.17
SF3A1-202ENST00000411423 RNF125Q96EQ8 232 aa13.97□□□□□ -0.17
SF3A1-202ENST00000411423 SLC35E1Q96K37 410 aa13.97□□□□□ -0.17
SF3A1-202ENST00000411423 ALMS1Q8TCU4 4167 aa13.97□□□□□ -0.17
SF3A1-202ENST00000411423 ZFP92A6NM28 416 aa13.96□□□□□ -0.17
SF3A1-202ENST00000411423 KNCNA6PVL3 124 aa13.96□□□□□ -0.17
SF3A1-202ENST00000411423 MED6O75586 246 aa13.96□□□□□ -0.17
SF3A1-202ENST00000411423 GIG44P09565 113 aaPredicted RBP13.96□□□□□ -0.17
SF3A1-202ENST00000411423 IL17DQ8TAD2 202 aa13.96□□□□□ -0.17
SF3A1-202ENST00000411423 LYRM1O43325 122 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 RAB11AP62491 216 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 OR2F1Q13607 317 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 SPANXN5Q5MJ07 72 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 TMEM182Q6ZP80 229 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-202ENST00000411423 THAP8Q8NA92 274 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 COQ8AQ8NI60 647 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 GRAMD2BQ96HH9 432 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 NARS2Q96I59 477 aaKnown RBP13.95□□□□□ -0.18
SF3A1-202ENST00000411423 PBDC1Q9BVG4 233 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 C20orf85Q9H1P6 137 aa13.95□□□□□ -0.18
SF3A1-202ENST00000411423 AGRNO00468 2067 aa13.94□□□□□ -0.18
SF3A1-202ENST00000411423 PMS2P5A8MQ11 134 aa13.94□□□□□ -0.18
SF3A1-202ENST00000411423 CENPXA8MT69 81 aa13.94□□□□□ -0.18
SF3A1-202ENST00000411423 CCNKO75909 580 aa13.94□□□□□ -0.18
SF3A1-202ENST00000411423 PAX9P55771 341 aa13.94□□□□□ -0.18
SF3A1-202ENST00000411423 C4orf46Q504U0 113 aa13.94□□□□□ -0.18
SF3A1-202ENST00000411423 TRPT1Q86TN4 253 aaKnown RBP13.94□□□□□ -0.18
SF3A1-202ENST00000411423 CIB3Q96Q77 187 aaPredicted RBP13.94□□□□□ -0.18
SF3A1-202ENST00000411423 EIF2B2P49770 351 aaKnown RBP13.93□□□□□ -0.18
SF3A1-202ENST00000411423 LYZP61626 148 aa13.93□□□□□ -0.18
SF3A1-202ENST00000411423 MITD1Q8WV92 249 aa13.93□□□□□ -0.18
SF3A1-202ENST00000411423 TRGV9Q99603 122 aa13.93□□□□□ -0.18
SF3A1-202ENST00000411423 HELTA6NFD8 242 aa13.92□□□□□ -0.18
SF3A1-202ENST00000411423 CA1P00915 261 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-202ENST00000411423 TCRBP04435 133 aa13.92□□□□□ -0.18
SF3A1-202ENST00000411423 C4BPBP20851 252 aa13.92□□□□□ -0.18
SF3A1-202ENST00000411423 GATA2P23769 480 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-202ENST00000411423 SIGLEC15Q6ZMC9 328 aa13.92□□□□□ -0.18
SF3A1-202ENST00000411423 ACOT7LQ6ZUV0 252 aa13.92□□□□□ -0.18
SF3A1-202ENST00000411423 TRAV6A0A075B6T7 132 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 CCSO14618 274 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 SSSCA1O60232 199 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 NKX2-1P43699 371 aaPredicted RBP13.91□□□□□ -0.18
SF3A1-202ENST00000411423 CNPY1Q3B7I2 92 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 PSMG4Q5JS54 123 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 OR8G2PQ6IF36 304 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 STHQ8IWL8 128 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 ZBTB8BQ8NAP8 495 aaPredicted RBP13.91□□□□□ -0.18
SF3A1-202ENST00000411423 SEC22CQ9BRL7 303 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 WDR12Q9GZL7 423 aaKnown RBP13.91□□□□□ -0.18
SF3A1-202ENST00000411423 NRN1Q9NPD7 142 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 PSENENQ9NZ42 101 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 TBC1D24Q9ULP9 559 aa13.91□□□□□ -0.18
SF3A1-202ENST00000411423 STRAPQ9Y3F4 350 aaKnown RBP13.91□□□□□ -0.18
SF3A1-202ENST00000411423 A6NHS1 94 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 IFNA21P01568 189 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 DEFB1P60022 68 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 RPP30P78346 268 aaKnown RBP13.9□□□□□ -0.18
SF3A1-202ENST00000411423 PMS2P11Q13670 270 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 IAH1Q2TAA2 248 aaPredicted RBP13.9□□□□□ -0.18
SF3A1-202ENST00000411423 ACTL10Q5JWF8 245 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 C17orf77Q96MU5 243 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 RAB40CQ96S21 281 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 RARRES2Q99969 163 aa13.9□□□□□ -0.18
SF3A1-202ENST00000411423 RCL1Q9Y2P8 373 aaKnown RBP13.9□□□□□ -0.18
SF3A1-202ENST00000411423 SCGB1D2O95969 90 aa13.89□□□□□ -0.19
SF3A1-202ENST00000411423 AP2S1P53680 142 aaPredicted RBP13.89□□□□□ -0.19
SF3A1-202ENST00000411423 OR11H2Q8NH07 326 aa13.89□□□□□ -0.19
SF3A1-202ENST00000411423 GATAD1Q8WUU5 269 aa13.89□□□□□ -0.19
SF3A1-202ENST00000411423 SMIM8Q96KF7 97 aa13.89□□□□□ -0.19
SF3A1-202ENST00000411423 CCDC32Q9BV29 185 aa13.89□□□□□ -0.19
SF3A1-202ENST00000411423 SNRPGP15A8MWD9 76 aa13.88□□□□□ -0.19
SF3A1-202ENST00000411423 SOCS3O14543 225 aa13.88□□□□□ -0.19
SF3A1-202ENST00000411423 TMEM14EPQ6UXP3 125 aa13.88□□□□□ -0.19
SF3A1-202ENST00000411423 NUDT15Q9NV35 164 aa13.88□□□□□ -0.19
SF3A1-202ENST00000411423 DEFB4AO15263 64 aa13.87□□□□□ -0.19
SF3A1-202ENST00000411423 MBPP02686 304 aaPredicted RBP13.87□□□□□ -0.19
SF3A1-202ENST00000411423 METTL15P1P0C7V9 234 aa13.87□□□□□ -0.19
SF3A1-202ENST00000411423 ARL16Q0P5N6 197 aa13.87□□□□□ -0.19
SF3A1-202ENST00000411423 GDF5OSQ5U4N7 250 aa13.87□□□□□ -0.19
SF3A1-202ENST00000411423 LINC00299Q6ZSB3 139 aa13.87□□□□□ -0.19
SF3A1-202ENST00000411423 CLEC5AQ9NY25 188 aa13.87□□□□□ -0.19
SF3A1-202ENST00000411423 GSKIPQ9P0R6 139 aa13.87□□□□□ -0.19
SF3A1-202ENST00000411423 EPPK1P58107 5090 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms