RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 A0A087WWC5 75 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 SAMD5Q5TGI4 173 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 TMEM86BQ8N661 226 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 ORAOV1Q8WV07 137 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 ABCA7Q8IZY2 2146 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 A8MXK9 166 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 ZNF672Q499Z4 452 aaPredicted RBP11.31□□□□□ -0.6
COL4A1-201ENST00000375820 STRCP1A6NGW2 1772 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 A0A087WWL8 130 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 LOC105371267A0A1B0GV96 52 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 SRRM4A7MD48 611 aaKnown RBP11.31□□□□□ -0.6
COL4A1-201ENST00000375820 PRCDQ00LT1 54 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 LAGE3Q14657 143 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BKO60814 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BJP06899 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 CXCL1P09341 107 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BOP23527 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BBP33778 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BDP58876 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BCP62807 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST2H2BEQ16778 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.3□□□□□ -0.6
COL4A1-201ENST00000375820 LINC00114Q6XXX2 140 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BHQ93079 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 ZNF479Q96JC4 524 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BNQ99877 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 HIST1H2BMQ99879 126 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 CHD5Q8TDI0 1954 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 TRAV9-2A0A087WT02 112 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 A0A1W2PRE2 83 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 TOMM40O96008 361 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 ZNF138P52744 262 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 LYZL1Q6UWQ5 148 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 PRADC1Q9BSG0 188 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 MBNL3Q9NUK0 354 aaKnown RBP11.3□□□□□ -0.6
COL4A1-201ENST00000375820 UBR3Q6ZT12 1888 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 PSG1P11464 419 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 LY6G6FQ5SQ64 297 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 LINC00477Q96M19 166 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 ERG28Q9UKR5 140 aa11.3□□□□□ -0.6
COL4A1-201ENST00000375820 COL11A2P13942 1736 aaPredicted RBP11.3□□□□□ -0.6
COL4A1-201ENST00000375820 TRAV13-1A0A0B4J241 112 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 FAM90A1Q86YD7 464 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 C1orf159Q96HA4 380 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 CEP290O15078 2479 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 H3BUX3 64 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 ORMDL2Q53FV1 153 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 IGKV1-12A0A0C4DH73 117 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 IGKV1D-12P01611 117 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 IFI6P09912 130 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 OCIAD2Q56VL3 154 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 A8MWV9 139 aa11.29□□□□□ -0.6
COL4A1-201ENST00000375820 DEFB130BP0DP73 79 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 DEFB130AP0DP74 79 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 ERCC8Q13216 396 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 TREML4Q6UXN2 200 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 C14orf178Q8N769 122 aaPredicted RBP11.28□□□□□ -0.6
COL4A1-201ENST00000375820 LTBP4Q8N2S1 1624 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 A0A087X0K7 114 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 LILRA1O75019 489 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 TEX38Q6PEX7 206 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 DTX2Q86UW9 622 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 ATXN8Q156A1 80 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 KLHL30-AS1Q8NEE0 82 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 GFI1Q99684 422 aa11.28□□□□□ -0.6
COL4A1-201ENST00000375820 TRAV8-1A0A0A6YYK1 113 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 F8VVB4 439 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 F8VWA3 439 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 TSKUQ8WUA8 353 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 C5orf63A6NC05 138 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 LCN12Q6JVE5 192 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 ZNF562Q6V9R5 426 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 Q71RC1 249 aaPredicted RBP11.27□□□□□ -0.6
COL4A1-201ENST00000375820 ZNF581Q9P0T4 197 aa11.27□□□□□ -0.6
COL4A1-201ENST00000375820 GAGE13Q4V321 117 aa11.27□□□□□ -0.61
COL4A1-201ENST00000375820 MGST2Q99735 147 aa11.27□□□□□ -0.61
COL4A1-201ENST00000375820 OSTCQ9NRP0 149 aa11.27□□□□□ -0.61
COL4A1-201ENST00000375820 IGHV1-3A0A0C4DH29 117 aa11.27□□□□□ -0.61
COL4A1-201ENST00000375820 SH2D1AO60880 128 aa11.27□□□□□ -0.61
COL4A1-201ENST00000375820 TRAV8-3A0A0A6YYJ7 113 aa11.27□□□□□ -0.61
COL4A1-201ENST00000375820 CD177Q8N6Q3 437 aa11.27□□□□□ -0.61
COL4A1-201ENST00000375820 IGKV1-27A0A075B6S5 117 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 OVOL1O14753 267 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 RNF144BQ7Z419 303 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 LURAP1LQ8IV03 231 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 SSC4DQ8WTU2 575 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 ZNF236Q9UL36 1845 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 MPDZO75970 2070 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 TRAV9-1A0A075B6T8 112 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 SIGMAR1Q99720 223 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 GNB1LQ9BYB4 327 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 CSTL1Q9H114 145 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 ZNRD1Q9P1U0 126 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 ALPK2Q86TB3 2170 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 PSPNO60542 156 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 IGHV1-8P0DP01 117 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 GUSBP1Q15486 140 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 SPXQ9BT56 116 aa11.26□□□□□ -0.61
COL4A1-201ENST00000375820 KNCNA6PVL3 124 aa11.25□□□□□ -0.61
COL4A1-201ENST00000375820 MLANAQ16655 118 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms