RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 ZNF883P0CG24 379 aa11.4□□□□□ -0.58
COL6A1-201ENST00000361866 ZNF414Q96IQ9 312 aa11.4□□□□□ -0.58
COL6A1-201ENST00000361866 SS18L1O75177 396 aaPredicted RBP11.4□□□□□ -0.58
COL6A1-201ENST00000361866 SRSF6Q13247 344 aaKnown RBP11.4□□□□□ -0.58
COL6A1-201ENST00000361866 EXOC3-AS1Q8N2X6 119 aa11.4□□□□□ -0.58
COL6A1-201ENST00000361866 CIARTQ8N365 385 aaPredicted RBP11.4□□□□□ -0.58
COL6A1-201ENST00000361866 PNKDQ8N490 385 aa11.4□□□□□ -0.58
COL6A1-201ENST00000361866 MYOZ3Q8TDC0 251 aa11.4□□□□□ -0.58
COL6A1-201ENST00000361866 C2orf16Q68DN1 1984 aa11.4□□□□□ -0.59
COL6A1-201ENST00000361866 A0A087X0K7 114 aa11.4□□□□□ -0.59
COL6A1-201ENST00000361866 LGALS7P47929 136 aa11.4□□□□□ -0.59
COL6A1-201ENST00000361866 PET117Q6UWS5 81 aa11.4□□□□□ -0.59
COL6A1-201ENST00000361866 C20orf144Q9BQM9 153 aa11.4□□□□□ -0.59
COL6A1-201ENST00000361866 DYSFO75923 2080 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 CHD7Q9P2D1 2997 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 A1L4Q6 167 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 MGPP08493 103 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 ASCL5Q7RTU5 278 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 PRELID3AQ96N28 172 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 RCHY1Q96PM5 261 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 EML6Q6ZMW3 1958 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 IGHV3-66A0A0C4DH42 116 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 ATP5IP56385 69 aaPredicted RBP11.39□□□□□ -0.59
COL6A1-201ENST00000361866 TCRBV4S1A1TA0A5B7 111 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 OR2T8A6NH00 312 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 LYNX1G3V0Z9 82 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 LYNX1P0DP58 116 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 ZNF502Q8TBZ5 544 aa11.39□□□□□ -0.59
COL6A1-201ENST00000361866 LSM4Q9Y4Z0 139 aaKnown RBP11.39□□□□□ -0.59
COL6A1-201ENST00000361866 PPIAL4CA0A0B4J2A2 164 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 PPIAL4GP0DN37 164 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 GPR183P32249 361 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 DUX4L9Q6RFH8 374 aaPredicted RBP11.38□□□□□ -0.59
COL6A1-201ENST00000361866 MEGF9Q9H1U4 602 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 RPUSD1Q9UJJ7 312 aaKnown RBP11.38□□□□□ -0.59
COL6A1-201ENST00000361866 RALYQ9UKM9 306 aaKnown RBP11.38□□□□□ -0.59
COL6A1-201ENST00000361866 FRMD6-AS1P0C7T7 363 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 SLAQ13239 276 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 Q6ZR03 302 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 TMEM160Q9NX00 188 aa11.38□□□□□ -0.59
COL6A1-201ENST00000361866 ANKHD1Q8IWZ3 2542 aaKnown RBP11.38□□□□□ -0.59
COL6A1-201ENST00000361866 GGTLC3B5MD39 225 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 ZNF134P52741 427 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 LINC00312Q9Y6C7 94 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 PPIFP30405 207 aaKnown RBP11.37□□□□□ -0.59
COL6A1-201ENST00000361866 YPEL3P61236 119 aaPredicted RBP11.37□□□□□ -0.59
COL6A1-201ENST00000361866 ERVK11-1P61568 191 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 C1orf162Q8NEQ5 155 aaPredicted RBP11.37□□□□□ -0.59
COL6A1-201ENST00000361866 STPG4Q8N801 248 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 PRR7Q8TB68 274 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 C18orf32Q8TCD1 76 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 PYGO2Q9BRQ0 406 aa11.37□□□□□ -0.59
COL6A1-201ENST00000361866 TRBV20OR9-2A0A075B6H5 130 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 LOC107984156A0A0G2JMH3 177 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 DKK1O94907 266 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 IGLC2P0DOY2 106 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 IGLC3P0DOY3 106 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 ARL17AQ8IVW1 177 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 TEX45Q8NA69 505 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 A0A1B0GV72 72 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 IGHV1-46P01743 117 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 CACNG7P62955 275 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 ODF3L1Q8IXM7 274 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 Q8NFD4 153 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 EML5Q05BV3 1969 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 K7EN84 100 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 HTN1P15515 57 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 ZNF788Q6ZQV5 615 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 MAP1LC3AQ9H492 121 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 V9GYV3 84 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 TM4SF5O14894 197 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 VDAC2P45880 294 aaPredicted RBP11.36□□□□□ -0.59
COL6A1-201ENST00000361866 BSPH1Q075Z2 132 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 Q0VG73 95 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 RNF138Q8WVD3 245 aa11.36□□□□□ -0.59
COL6A1-201ENST00000361866 ADAMTS9Q9P2N4 1935 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 FAM90A9PA6NNJ1 464 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 RPL15P61313 204 aaKnown RBP11.35□□□□□ -0.59
COL6A1-201ENST00000361866 COA6Q5JTJ3 125 aaKnown RBP11.35□□□□□ -0.59
COL6A1-201ENST00000361866 C2CD3Q4AC94 2353 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 H3BVH4 76 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 BMI1P35226 326 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 HIST1H4GQ99525 98 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 RAB1BQ9H0U4 201 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 PTPRQQ9UMZ3 2332 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 PMS2P5A8MQ11 134 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 C17orf100A8MU93 164 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 LMO1P25800 156 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 DLX1P56177 255 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 SFTA2Q6UW10 78 aa11.35□□□□□ -0.59
COL6A1-201ENST00000361866 IGHV1-69-2A0A0G2JMI3 117 aa11.34□□□□□ -0.59
COL6A1-201ENST00000361866 MFAP4P55083 255 aa11.34□□□□□ -0.59
COL6A1-201ENST00000361866 UBE2V1Q13404 147 aa11.34□□□□□ -0.59
COL6A1-201ENST00000361866 FMC1Q96HJ9 113 aa11.34□□□□□ -0.59
COL6A1-201ENST00000361866 GOSR1O95249 250 aa11.34□□□□□ -0.59
COL6A1-201ENST00000361866 RNASE2P10153 161 aaKnown RBP11.34□□□□□ -0.59
COL6A1-201ENST00000361866 KLF17Q5JT82 389 aaPredicted RBP11.34□□□□□ -0.59
COL6A1-201ENST00000361866 SAMD13Q5VXD3 122 aa11.34□□□□□ -0.59
COL6A1-201ENST00000361866 FAM168AQ92567 244 aa11.34□□□□□ -0.59
COL6A1-201ENST00000361866 SPCS1Q9Y6A9 102 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms