RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 COX6CP09669 75 aa15.23■□□□□ 0.03
CLIP2-202ENST00000361545 A6NNC1 897 aa15.23■□□□□ 0.03
CLIP2-202ENST00000361545 LINC00473A8K010 186 aa15.23■□□□□ 0.03
CLIP2-202ENST00000361545 FOXL2NBQ6ZUU3 175 aa15.23■□□□□ 0.03
CLIP2-202ENST00000361545 PIP4P1Q86T03 277 aa15.23■□□□□ 0.03
CLIP2-202ENST00000361545 GAGE10A6NGK3 116 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 J3QKU1 62 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 MPZP25189 248 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 RUSC1-AS1Q66K80 236 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 TREML4Q6UXN2 200 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 GSN-AS1Q9NRJ2 163 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 PSG8Q9UQ74 426 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 TP53BP1Q12888 1972 aaPredicted RBP15.22■□□□□ 0.03
CLIP2-202ENST00000361545 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.22■□□□□ 0.032e-6■■■□□ 17.3
CLIP2-202ENST00000361545 PSG1P11464 419 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 NOTCH3Q9UM47 2321 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 STAG3L2P0CL84 134 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 LHFPL1Q86WI0 220 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 TOMM7Q9P0U1 55 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 NDPQ00604 133 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 DEFB121Q5J5C9 76 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 LINC00469Q8N7U9 141 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 VSIRQ9H7M9 311 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 WFDC1Q9HC57 220 aa15.22■□□□□ 0.03
CLIP2-202ENST00000361545 TNFSF13O75888 250 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 OR13C6PQ8NH95 151 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 SCGB3A1Q96QR1 104 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 PIP4P2Q8N4L2 257 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 TRAV21A0A0B4J279 112 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 PMS2P5A8MQ11 134 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 TMEM155Q4W5P6 130 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 ZNF414Q96IQ9 312 aa15.21■□□□□ 0.03
CLIP2-202ENST00000361545 DOCK9Q9BZ29 2069 aa15.21■□□□□ 0.02
CLIP2-202ENST00000361545 IGKV1-5P01602 117 aa15.21■□□□□ 0.02
CLIP2-202ENST00000361545 MSMBP08118 114 aa15.21■□□□□ 0.02
CLIP2-202ENST00000361545 KLHL30-AS1Q8NEE0 82 aa15.21■□□□□ 0.02
CLIP2-202ENST00000361545 SOD3P08294 240 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 LCNL1Q6ZST4 164 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 TRAV8-6A0A0B4J262 113 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 HS3ST6Q96QI5 342 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 ZNRD1Q9P1U0 126 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 PGPEP1LA6NFU8 196 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 SUPT4H1P63272 117 aaKnown RBP15.2■□□□□ 0.02
CLIP2-202ENST00000361545 MRAP2Q96G30 205 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 Q96MF0 132 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 RNF5Q99942 180 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 UQCR10Q9UDW1 63 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 TRGV4A0A0C4DH28 118 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 FHL1Q13642 323 aa15.2■□□□□ 0.02
CLIP2-202ENST00000361545 CCL20P78556 96 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 TCF15Q12870 199 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 Q6AWC8 147 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 TEX38Q6PEX7 206 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 SCRT1Q9BWW7 348 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 FAM208BQ5VWN6 2430 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 A0A1B0GWJ7 208 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 TMEM50AO95807 157 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 ZNF688P0C7X2 276 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 SLC25A34Q6PIV7 304 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 Q71RC1 249 aaPredicted RBP15.19■□□□□ 0.02
CLIP2-202ENST00000361545 SIGLEC9Q9Y336 463 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 TBL2Q9Y4P3 447 aaKnown RBP15.19■□□□□ 0.02
CLIP2-202ENST00000361545 LINC00587B1AMM8 73 aa15.19■□□□□ 0.02
CLIP2-202ENST00000361545 RPL23P62829 140 aaKnown RBP15.19■□□□□ 0.02
CLIP2-202ENST00000361545 A0A1W2PRE2 83 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 PRTN3P24158 256 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 PLP1P60201 277 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 NDUFS8O00217 210 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 ORMDL3Q8N138 153 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 OR11H12B2RN74 326 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 CEACAM8P31997 349 aaPredicted RBP15.18■□□□□ 0.02
CLIP2-202ENST00000361545 OR10J3Q5JRS4 329 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 OR11H1Q8NG94 326 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 OR11H2Q8NH07 326 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 C2orf88Q9BSF0 95 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 SSBP4Q9BWG4 385 aaPredicted RBP15.18■□□□□ 0.02
CLIP2-202ENST00000361545 NOTCH4Q99466 2003 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 CREBBPQ92793 2442 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 ERVK11-1P61568 191 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 GGTLC1Q9BX51 225 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 BEX4Q9NWD9 120 aaPredicted RBP15.18■□□□□ 0.02
CLIP2-202ENST00000361545 IGKV2-40A0A087WW87 121 aaPredicted RBP15.18■□□□□ 0.02
CLIP2-202ENST00000361545 IGKV2D-40P01614 121 aaPredicted RBP15.18■□□□□ 0.02
CLIP2-202ENST00000361545 SPATA31B1PQ5VZV4 182 aa15.18■□□□□ 0.02
CLIP2-202ENST00000361545 NPIPB5A8MRT5 1133 aa15.17■□□□□ 0.02
CLIP2-202ENST00000361545 IZUMO1RA6ND01 250 aa15.17■□□□□ 0.02
CLIP2-202ENST00000361545 C3orf56Q8N813 242 aa15.17■□□□□ 0.02
CLIP2-202ENST00000361545 FOXC2Q99958 501 aa15.17■□□□□ 0.02
CLIP2-202ENST00000361545 EXOC3-AS1Q8N2X6 119 aa15.17■□□□□ 0.02
CLIP2-202ENST00000361545 ALKBH7Q9BT30 221 aaPredicted RBP15.17■□□□□ 0.02
CLIP2-202ENST00000361545 MED13LQ71F56 2210 aa15.17■□□□□ 0.02
CLIP2-202ENST00000361545 OVOL1O14753 267 aa15.16■□□□□ 0.02
CLIP2-202ENST00000361545 IGKV1-16P04430 117 aa15.16■□□□□ 0.02
CLIP2-202ENST00000361545 TDGF1P13385 188 aa15.16■□□□□ 0.02
CLIP2-202ENST00000361545 IGKV3D-20A0A0C4DH25 116 aa15.16■□□□□ 0.02
CLIP2-202ENST00000361545 QRFPP83859 136 aa15.16■□□□□ 0.02
CLIP2-202ENST00000361545 ATRAIDQ6UW56 229 aa15.16■□□□□ 0.02
CLIP2-202ENST00000361545 SLC25A39Q9BZJ4 359 aaPredicted RBP15.16■□□□□ 0.02
CLIP2-202ENST00000361545 RPL35AP18077 110 aaKnown RBP15.16■□□□□ 0.02
CLIP2-202ENST00000361545 A8MXK9 166 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms