RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 HGFACQ04756 655 aa13.27□□□□□ -0.29
COL18A1-203ENST00000359759 WBP1Q96G27 269 aa13.27□□□□□ -0.29
COL18A1-203ENST00000359759 ABHD17AQ96GS6 310 aa13.27□□□□□ -0.29
COL18A1-203ENST00000359759 TMEM256Q8N2U0 113 aa13.27□□□□□ -0.29
COL18A1-203ENST00000359759 MARF1Q9Y4F3 1742 aaKnown RBP13.27□□□□□ -0.29
COL18A1-203ENST00000359759 ZNF138P52744 262 aa13.26□□□□□ -0.29
COL18A1-203ENST00000359759 PRSS22Q9GZN4 317 aa13.26□□□□□ -0.29
COL18A1-203ENST00000359759 PRCDQ00LT1 54 aa13.26□□□□□ -0.29
COL18A1-203ENST00000359759 C10orf55Q5SWW7 151 aa13.26□□□□□ -0.29
COL18A1-203ENST00000359759 PRADC1Q9BSG0 188 aa13.26□□□□□ -0.29
COL18A1-203ENST00000359759 RPUSD1Q9UJJ7 312 aaKnown RBP13.26□□□□□ -0.29
COL18A1-203ENST00000359759 STRCP1A6NGW2 1772 aa13.26□□□□□ -0.29
COL18A1-203ENST00000359759 TRAV40A0A0B4J280 105 aa13.26□□□□□ -0.29
COL18A1-203ENST00000359759 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.25□□□□□ -0.29
COL18A1-203ENST00000359759 IGKV1-9A0A0C4DH69 117 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 KLRD1Q13241 179 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 ACTL10Q5JWF8 245 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 NDUFS6O75380 124 aaKnown RBP13.25□□□□□ -0.29
COL18A1-203ENST00000359759 ATAD5Q96QE3 1844 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 KIR3DS1Q14943 382 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 Q8TAT8 98 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 DLEU1O43261 78 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 SH2D1AO60880 128 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 DTX2Q86UW9 622 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 FAM90A1Q86YD7 464 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 TRGV1A0A0A0MS02 117 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 MPV17L2Q567V2 206 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 TEX43Q6ZNM6 134 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 MRAPQ8TCY5 172 aa13.25□□□□□ -0.29
COL18A1-203ENST00000359759 SAP30O75446 220 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 SPINK8P0C7L1 97 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 DUTP33316 252 aaKnown RBP13.24□□□□□ -0.29
COL18A1-203ENST00000359759 TREML4Q6UXN2 200 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 DLX4Q92988 240 aaPredicted RBP13.24□□□□□ -0.29
COL18A1-203ENST00000359759 MGST2Q99735 147 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 UNC13CQ8NB66 2214 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 A0A087WX48 190 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 COLCA2A8K830 154 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 OVOL1O14753 267 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 PSG3Q16557 428 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 CSTL1Q9H114 145 aa13.24□□□□□ -0.29
COL18A1-203ENST00000359759 SLC25A39Q9BZJ4 359 aaPredicted RBP13.24□□□□□ -0.29
COL18A1-203ENST00000359759 FGFBP3Q8TAT2 258 aa13.23□□□□□ -0.29
COL18A1-203ENST00000359759 FGF16O43320 207 aa13.23□□□□□ -0.29
COL18A1-203ENST00000359759 NUP35Q8NFH5 326 aa13.23□□□□□ -0.29
COL18A1-203ENST00000359759 MBNL3Q9NUK0 354 aaKnown RBP13.23□□□□□ -0.29
COL18A1-203ENST00000359759 COL11A1P12107 1806 aaPredicted RBP13.23□□□□□ -0.29
COL18A1-203ENST00000359759 ADAMTSL5Q6ZMM2 481 aa13.23□□□□□ -0.29
COL18A1-203ENST00000359759 IGHV1-18A0A0C4DH31 117 aa13.23□□□□□ -0.29
COL18A1-203ENST00000359759 LINC00114Q6XXX2 140 aa13.23□□□□□ -0.29
COL18A1-203ENST00000359759 C5orf24Q7Z6I8 188 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 TMEM158Q8WZ71 300 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 SPXQ9BT56 116 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 LINC00271P0C7V0 271 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 GGTLC1Q9BX51 225 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 C9JAW5 83 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 LEPROTO15243 131 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 THBDP07204 575 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 C1orf194Q5T5A4 169 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 GFI1Q99684 422 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 TRAV13-1A0A0B4J241 112 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 A0A1W2PR77 199 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 F8WEM9 126 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 RPL32P62910 135 aaKnown RBP13.22□□□□□ -0.29
COL18A1-203ENST00000359759 VMO1Q7Z5L0 202 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 PDCD11Q14690 1871 aaKnown RBP13.22□□□□□ -0.29
COL18A1-203ENST00000359759 TRAV3A0A0B4J244 114 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 SUMO4Q6EEV6 95 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 PLEKHB2Q96CS7 222 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 SMPXQ9UHP9 88 aa13.22□□□□□ -0.29
COL18A1-203ENST00000359759 ASXL3Q9C0F0 2248 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 A0A087WWL8 130 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 SRSF7Q16629 238 aaKnown RBP eCLIP13.21□□□□□ -0.293e-7■■■■□ 25.7
COL18A1-203ENST00000359759 C15orf32Q32M92 178 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 PAQR4Q8N4S7 273 aaPredicted RBP13.21□□□□□ -0.29
COL18A1-203ENST00000359759 CITED1Q99966 193 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 C14orf178Q8N769 122 aaPredicted RBP13.21□□□□□ -0.29
COL18A1-203ENST00000359759 C1orf159Q96HA4 380 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 PSCAO43653 123 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 FCN3O75636 299 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 ERCC8Q13216 396 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 RASL10AQ92737 203 aa13.21□□□□□ -0.29
COL18A1-203ENST00000359759 TRAV41A0A0B4J266 112 aa13.21□□□□□ -0.3
COL18A1-203ENST00000359759 SRRM4A7MD48 611 aaKnown RBP13.21□□□□□ -0.3
COL18A1-203ENST00000359759 C3orf79P0CE67 100 aa13.21□□□□□ -0.3
COL18A1-203ENST00000359759 UBE2E2Q96LR5 201 aa13.21□□□□□ -0.3
COL18A1-203ENST00000359759 KLF17Q5JT82 389 aaPredicted RBP13.21□□□□□ -0.3
COL18A1-203ENST00000359759 SSC4DQ8WTU2 575 aa13.21□□□□□ -0.3
COL18A1-203ENST00000359759 WNT2P09544 360 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 C6orf226Q5I0X4 101 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 CD5P06127 495 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 SELLP14151 372 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 SPRR3Q9UBC9 169 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 SCN4AP35499 1836 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 ID3Q02535 119 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 GLRX5Q86SX6 157 aa13.2□□□□□ -0.3
COL18A1-203ENST00000359759 POLR2AP24928 1970 aaKnown RBP13.2□□□□□ -0.3
COL18A1-203ENST00000359759 WDR83OSQ9Y284 106 aa13.19□□□□□ -0.3
COL18A1-203ENST00000359759 PINLYPA6NC86 204 aa13.19□□□□□ -0.3
COL18A1-203ENST00000359759 ZNF236Q9UL36 1845 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms