RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 G3V318 75 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 NDUFA4O00483 81 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 MMP23AO75900 390 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 CSN3P07498 182 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 CENPWQ5EE01 88 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 TTC9CQ8N5M4 171 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 NEU1Q99519 415 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 TNFRSF18Q9Y5U5 241 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 AMBPP02760 352 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 CKS2P33552 79 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 CLRN3Q8NCR9 226 aa8.15□□□□□ -1.11
USP54-201ENST00000339859 PHF3Q92576 2039 aaKnown RBP8.15□□□□□ -1.11
USP54-201ENST00000339859 TMEM262E9PQX1 116 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 NDUFB8O95169 186 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 INSP01308 110 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 CD7P09564 240 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 IER3P46695 156 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 CD81P60033 236 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 PPP1R17O96001 155 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 OR5AL1P0C617 328 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 LINC00205P59089 165 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 C9orf66Q5T8R8 295 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 TMEM37Q8WXS4 190 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 GCSHP23434 173 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 NDPQ00604 133 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 ACTL10Q5JWF8 245 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 ZNF407Q9C0G0 2248 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 MST1LQ2TV78 715 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 TMEM101Q96IK0 257 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 ZFP36P26651 326 aaKnown RBP8.14□□□□□ -1.11
USP54-201ENST00000339859 TAS2R60P59551 318 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 LIME1Q9H400 295 aa8.14□□□□□ -1.11
USP54-201ENST00000339859 PRSS1P07477 247 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 TMEM97Q5BJF2 176 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 NPBQ8NG41 125 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 MAP1LC3AQ9H492 121 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 TRAV34A0A0B4J273 112 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 FABP5P3A8MUU1 101 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 YPEL3P61236 119 aaPredicted RBP8.13□□□□□ -1.11
USP54-201ENST00000339859 TMEM88Q6PEY1 159 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 COL6A6A6NMZ7 2263 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 ZNF506Q5JVG8 444 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 RNF126Q9BV68 326 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 FSTL3O95633 263 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 KRTDAPP60985 99 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 SIRPDQ9H106 197 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 EPDR1Q9UM22 224 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 A8MXK9 166 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 TMEM250H0YL14 139 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 M0R2Z0 102 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 MT-ND6P03923 174 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 CRISP2P16562 243 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 Q6AWC8 147 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 TMEM14EPQ6UXP3 125 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 FGF23Q9GZV9 251 aaPredicted RBP8.13□□□□□ -1.11
USP54-201ENST00000339859 ZMAT4Q9H898 229 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 ZFP30Q9Y2G7 519 aa8.13□□□□□ -1.11
USP54-201ENST00000339859 TP53BP1Q12888 1972 aaPredicted RBP8.12□□□□□ -1.11
USP54-201ENST00000339859 A0A1W2PRE2 83 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 ZNF98A6NK75 572 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 ZNF134P52741 427 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 CACNG7P62955 275 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 RARRES2Q99969 163 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 TMPRSS5Q9H3S3 457 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 HSPB8Q9UJY1 196 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 TNRC6AQ8NDV7 1962 aaKnown RBP8.12□□□□□ -1.11
USP54-201ENST00000339859 LGALS1P09382 135 aaKnown RBP8.12□□□□□ -1.11
USP54-201ENST00000339859 ZNF688P0C7X2 276 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 WFDC11Q8NEX6 87 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 LINC00477Q96M19 166 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 SCRT1Q9BWW7 348 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 GGTLC1Q9BX51 225 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 TMEM50AO95807 157 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 C11orf71Q6IPW1 123 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 MGST2Q99735 147 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 PARLQ9H300 379 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 MED12Q93074 2177 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 TRGV4A0A0C4DH28 118 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 CCL24O00175 119 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 DIAPH2-AS1Q14236 149 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 PDZD11Q5EBL8 140 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 KIR2DL4Q99706 377 aa8.12□□□□□ -1.11
USP54-201ENST00000339859 MRPL27Q9P0M9 148 aaKnown RBP8.12□□□□□ -1.11
USP54-201ENST00000339859 CLPSL1A2RUU4 121 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 PYYP10082 97 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 FAM24BQ8N5W8 94 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 M0R381 172 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 EIF3GO75821 320 aaKnown RBP eCLIP8.11□□□□□ -1.11
USP54-201ENST00000339859 HIST2H2BCQ6DN03 193 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 A0A1B0GW15 77 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 LINC00862A6NCI5 91 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 ZNF253O75346 499 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 ZNF415Q09FC8 603 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 PUSL1Q8N0Z8 303 aaKnown RBP8.11□□□□□ -1.11
USP54-201ENST00000339859 MAP1LC3CQ9BXW4 147 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 LOC389332A0A1B0GUA5 103 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 SFRP2Q96HF1 295 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 GSX1Q9H4S2 264 aaPredicted RBP8.11□□□□□ -1.11
USP54-201ENST00000339859 PSG8Q9UQ74 426 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 SCO2A0A1W2PP80 73 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms