RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 C1orf194Q5T5A4 169 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 SAMD5Q5TGI4 173 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 SCRT1Q9BWW7 348 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 TRBV6-7A0A0A0MS04 114 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 H3BUX3 64 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 FOXG1P55316 489 aaPredicted RBP10.44□□□□□ -0.74
SDC3-201ENST00000336798 SPATA31B1PQ5VZV4 182 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 KLHL30-AS1Q8NEE0 82 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 TMEM170AQ8WVE7 144 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 SLC25A39Q9BZJ4 359 aaPredicted RBP10.44□□□□□ -0.74
SDC3-201ENST00000336798 IGHV2-26A0A0B4J1V2 119 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 CFHR3Q02985 330 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 LAIR2Q6ISS4 152 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 ZNF562Q6V9R5 426 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 PRDM13Q9H4Q3 707 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 ARFGEF1Q9Y6D6 1849 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 TOMM40O96008 361 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 TCRAP04437 139 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 A0A1B0GTI1 187 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 DEFB130BP0DP73 79 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 DEFB130AP0DP74 79 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 PLNP26678 52 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 ZNF664Q8N3J9 261 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 OCC1Q8TAD7 63 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 COL11A1P12107 1806 aaPredicted RBP10.43□□□□□ -0.74
SDC3-201ENST00000336798 LILRA1O75019 489 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 EFNB3Q15768 340 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 FAM90A1Q86YD7 464 aa10.43□□□□□ -0.74
SDC3-201ENST00000336798 RGPD3A6NKT7 1758 aaPredicted RBP10.43□□□□□ -0.74
SDC3-201ENST00000336798 GAGE12BA1L429 117 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 TMEM200BQ69YZ2 307 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 MRPL14Q6P1L8 145 aaKnown RBP10.42□□□□□ -0.74
SDC3-201ENST00000336798 HEPN1Q6WQI6 88 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 ZNF883P0CG24 379 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 Q8TAT8 98 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 EDA2RQ9HAV5 297 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 GAGE13Q4V321 117 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 RPUSD1Q9UJJ7 312 aaKnown RBP10.42□□□□□ -0.74
SDC3-201ENST00000336798 C5orf24Q7Z6I8 188 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 COL4A5P29400 1685 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 MARF1Q9Y4F3 1742 aaKnown RBP10.42□□□□□ -0.74
SDC3-201ENST00000336798 SRRM4A7MD48 611 aaKnown RBP10.42□□□□□ -0.74
SDC3-201ENST00000336798 NAPSAO96009 420 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 CCL20P78556 96 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 ATP5L2Q7Z4Y8 100 aa10.42□□□□□ -0.74
SDC3-201ENST00000336798 C3orf56Q8N813 242 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 VWCEQ96DN2 955 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 A8MWV9 139 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 IGHV2-70P01814 119 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 FAM166AQ6J272 317 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 C1orf159Q96HA4 380 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 MBNL3Q9NUK0 354 aaKnown RBP10.41□□□□□ -0.74
SDC3-201ENST00000336798 GHRHP01286 108 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 TRAV9-2A0A087WT02 112 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 RNF222A6NCQ9 220 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 ATXN8Q156A1 80 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 TRAV13-1A0A0B4J241 112 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 ITGB1BP1O14713 200 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 REG4Q9BYZ8 158 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 ZNF319Q9P2F9 582 aa10.41□□□□□ -0.74
SDC3-201ENST00000336798 IGKV1-9A0A0C4DH69 117 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 OVOL1O14753 267 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 ORMDL2Q53FV1 153 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 PIP4P2Q8N4L2 257 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 PAQR4Q8N4S7 273 aaPredicted RBP10.4□□□□□ -0.74
SDC3-201ENST00000336798 WFDC1Q9HC57 220 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 E9PLN8 166 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 CXCL1P09341 107 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 DUTP33316 252 aaKnown RBP10.4□□□□□ -0.74
SDC3-201ENST00000336798 A0A087WWL8 130 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 A0A0A6YYD4 124 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 D6R8Y8 96 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 PRCDQ00LT1 54 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 LAGE3Q14657 143 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 IGKV1D-8A0A087WSZ0 117 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 IFI6P09912 130 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 ERG28Q9UKR5 140 aa10.4□□□□□ -0.74
SDC3-201ENST00000336798 ZNF479Q96JC4 524 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 RNF126Q9BV68 326 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 TRAV3A0A0B4J244 114 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 C6orf226Q5I0X4 101 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 LINC00477Q96M19 166 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 IGHV1-3A0A0C4DH29 117 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 F8WEM9 126 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 IFI27L1Q96BM0 104 aa10.39□□□□□ -0.75
SDC3-201ENST00000336798 KIF13BQ9NQT8 1826 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 SNHG12Q9BXW3 62 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 ESPL1Q14674 2120 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 RALGAPA1Q6GYQ0 2036 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 IGFBP3P17936 291 aaPredicted RBP10.38□□□□□ -0.75
SDC3-201ENST00000336798 SSBP2P81877 361 aaPredicted RBP10.38□□□□□ -0.75
SDC3-201ENST00000336798 MORN3Q6PF18 240 aaPredicted RBP10.38□□□□□ -0.75
SDC3-201ENST00000336798 LYZL1Q6UWQ5 148 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 ANKRD36A6QL64 1941 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 A8MWP6 167 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 SMKR1H3BMG3 65 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 TIMP3P35625 211 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 LINC00205P59089 165 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 CABIN1Q9Y6J0 2220 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 COL4A1P02462 1669 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms