RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 IGKV1D-42A0A075B6H8 117 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 TRAV14DV4A0A0A6YYC5 116 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 SELLP14151 372 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 TMEM258P61165 79 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 HIVEP3Q5T1R4 2406 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 ZNHIT1O43257 154 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 DPM3Q9P2X0 92 aa11.99□□□□□ -0.49
COL7A1-201ENST00000328333 IGHV3OR16-12A0A075B7B8 117 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 A8MWP6 167 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 ATXN7O15265 892 aaPredicted RBP11.98□□□□□ -0.49
COL7A1-201ENST00000328333 TRGV3P03979 118 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 ZNF415Q09FC8 603 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 TNFRSF14Q92956 283 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 PILRAQ9UKJ1 303 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 THSD7AQ9UPZ6 1657 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 IGKV3OR2-268A0A0C4DH90 116 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 MSGN1A6NI15 193 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 UBE2WQ96B02 151 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 DPH3Q96FX2 82 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 TBX6O95947 436 aaPredicted RBP11.98□□□□□ -0.49
COL7A1-201ENST00000328333 PEBP1P30086 187 aaKnown RBP11.98□□□□□ -0.49
COL7A1-201ENST00000328333 EFNB3Q15768 340 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 TPRX1Q8N7U7 411 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 RNF126Q9BV68 326 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 FOXA2Q9Y261 457 aaPredicted RBP11.98□□□□□ -0.49
COL7A1-201ENST00000328333 TGFAP01135 160 aa11.98□□□□□ -0.49
COL7A1-201ENST00000328333 BTCP35070 178 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 ATP5G3P48201 142 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 A0A0G2JK05 382 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 LYPD1Q8N2G4 141 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 C8orf46Q8TAG6 207 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 CCL21O00585 134 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 CD7P09564 240 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 SRD5A1P18405 259 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 RPL39P5Q59GN2 51 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 ZNF497Q6ZNH5 498 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 ZNF501Q96CX3 271 aaPredicted RBP11.97□□□□□ -0.49
COL7A1-201ENST00000328333 UTF1Q5T230 341 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 LAMTOR3Q9UHA4 124 aa11.97□□□□□ -0.49
COL7A1-201ENST00000328333 FNDC10F2Z333 226 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 OVOL1O14753 267 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 IGLV3-21P80748 117 aaPredicted RBP11.96□□□□□ -0.49
COL7A1-201ENST00000328333 TECTAO75443 2155 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 CCL1P22362 96 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 PPP1R27Q86WC6 154 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 ZNF48Q96MX3 618 aaPredicted RBP11.96□□□□□ -0.49
COL7A1-201ENST00000328333 LY6G6FQ5SQ64 297 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.96□□□□□ -0.49
COL7A1-201ENST00000328333 TRGV2A0A075B6R0 118 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 MYMXA0A1B0GTQ4 84 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 LINC01551Q86U37 167 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 AMELYQ99218 206 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 FBXL7Q9UJT9 491 aa11.96□□□□□ -0.49
COL7A1-201ENST00000328333 IQCF6A8MYZ5 107 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 C12orf77C9JDV5 145 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 TEX43Q6ZNM6 134 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 NBR2O15453 112 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 CMC4P56277 68 aaPredicted RBP11.96□□□□□ -0.5
COL7A1-201ENST00000328333 ADAMTSL5Q6ZMM2 481 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 ATP6V0BQ99437 205 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 BRWD3Q6RI45 1802 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 CENPVL1A0A0U1RR11 272 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 PRCDQ00LT1 54 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 PDE6HQ13956 83 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 JMJD8Q96S16 334 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 GGTLC1Q9BX51 225 aa11.96□□□□□ -0.5
COL7A1-201ENST00000328333 KIAA1671Q9BY89 1806 aa11.95□□□□□ -0.5
COL7A1-201ENST00000328333 TANC1Q9C0D5 1861 aa11.95□□□□□ -0.5
COL7A1-201ENST00000328333 SAA1P0DJI8 122 aaPredicted RBP11.95□□□□□ -0.5
COL7A1-201ENST00000328333 TDGF1P3P51864 188 aa11.95□□□□□ -0.5
COL7A1-201ENST00000328333 Q6ZS52 159 aa11.95□□□□□ -0.5
COL7A1-201ENST00000328333 MIR17HGQ75NE6 70 aa11.95□□□□□ -0.5
COL7A1-201ENST00000328333 GLRX5Q86SX6 157 aa11.95□□□□□ -0.5
COL7A1-201ENST00000328333 TRACP01848 142 aa11.95□□□□□ -0.5
COL7A1-201ENST00000328333 REPIN1Q9BWE0 567 aaKnown RBP11.95□□□□□ -0.5
COL7A1-201ENST00000328333 FAM231BA6NCW3 169 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 ABCA2Q9BZC7 2435 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 TMEM92Q6UXU6 159 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 FAM89BQ8N5H3 189 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 ZNF826PQ6ZT77 177 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 WFDC6Q9BQY6 131 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 CELA2BP08218 269 aaPredicted RBP11.94□□□□□ -0.5
COL7A1-201ENST00000328333 IGHV3-72A0A0B4J1Y9 119 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 A6NNC1 897 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 DEFB123Q8N688 67 aa11.94□□□□□ -0.5
COL7A1-201ENST00000328333 IGHG4P01861 327 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 VCYO14598 125 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 WDR90Q96KV7 1748 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 LINC01545Q5VT33 79 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 SAA2-SAA4A0A096LPE2 208 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 SAA2P0DJI9 122 aaPredicted RBP11.93□□□□□ -0.5
COL7A1-201ENST00000328333 ID3Q02535 119 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 TRGV9Q99603 122 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 TET2Q6N021 2002 aaPredicted RBP11.93□□□□□ -0.5
COL7A1-201ENST00000328333 IL18BPO95998 194 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 PDLIM4P50479 330 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 OCC1Q8TAD7 63 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 RASL10AQ92737 203 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 LINC01587Q99440 93 aa11.93□□□□□ -0.5
COL7A1-201ENST00000328333 MUC21A0A0G2JKD1 596 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms