RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 PATJQ8NI35 1801 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 H3BRM9 83 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 PLP1P60201 277 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 COTL1Q14019 142 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 SPRY2O43597 315 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 DAD1P61803 113 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 DUTP33316 252 aaKnown RBP6.37□□□□□ -1.39
SCN9A-201ENST00000303354 DTX2Q86UW9 622 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 PRDM13Q9H4Q3 707 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 PEF1Q9UBV8 284 aaKnown RBP6.37□□□□□ -1.39
SCN9A-201ENST00000303354 SIGLEC9Q9Y336 463 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 FAM90A26D6RGX4 464 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 WISP1O95388 367 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 CCL1P22362 96 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 ADMP35318 185 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 HIST1H2BAQ96A08 127 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 RNF114Q9Y508 228 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 OTORQ9NRC9 128 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 LINC01619G3V211 115 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 CDK2AP2O75956 126 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 DIAPH2-AS1Q14236 149 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 EPDR1Q9UM22 224 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 MTCL1Q9Y4B5 1905 aaKnown RBP6.37□□□□□ -1.39
SCN9A-201ENST00000303354 SLC25A16P16260 332 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 SRSF3P84103 164 aaKnown RBP6.37□□□□□ -1.39
SCN9A-201ENST00000303354 CRIPAKQ8N1N5 446 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 IGKV1D-17A0A075B6S4 117 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 SPSB3Q6PJ21 355 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 ZMAT4Q9H898 229 aa6.37□□□□□ -1.39
SCN9A-201ENST00000303354 THADAQ6YHU6 1953 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 TRBV6-7A0A0A0MS04 114 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 SLC25A20O43772 301 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 BRCA1P38398 1863 aaKnown RBP6.36□□□□□ -1.39
SCN9A-201ENST00000303354 LINC00114Q6XXX2 140 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 REG4Q9BYZ8 158 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 BRWD1Q9NSI6 2320 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 KIF13BQ9NQT8 1826 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 UCP3P55916 312 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 A0A1B0GUT8 65 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 FABP2P12104 132 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 JOSD1Q15040 202 aaPredicted RBP6.36□□□□□ -1.39
SCN9A-201ENST00000303354 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.36□□□□□ -1.39
SCN9A-201ENST00000303354 IL36BQ9NZH7 164 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 TRAV8-1A0A0A6YYK1 113 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.36□□□□□ -1.39
SCN9A-201ENST00000303354 C14orf178Q8N769 122 aaPredicted RBP6.36□□□□□ -1.39
SCN9A-201ENST00000303354 BMPERQ8N8U9 685 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 OR11H2Q8NH07 326 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 UCP1P25874 307 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 LAIR2Q6ISS4 152 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 PAX4O43316 350 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 RNF166Q96A37 237 aaPredicted RBP6.36□□□□□ -1.39
SCN9A-201ENST00000303354 C18orf12Q96KH6 178 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 IGF2BP2-AS1Q96M15 143 aa6.36□□□□□ -1.39
SCN9A-201ENST00000303354 CHTOPQ9Y3Y2 248 aaKnown RBP6.36□□□□□ -1.39
SCN9A-201ENST00000303354 DOCK3Q8IZD9 2030 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 HLA-DQA1P01909 254 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 PARD6GQ9BYG4 376 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-201ENST00000303354 MRPS16Q9Y3D3 137 aaKnown RBP6.35□□□□□ -1.39
SCN9A-201ENST00000303354 CACNA1CQ13936 2221 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 TRGV11A0A075B6L2 103 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 ZFP36P26651 326 aaKnown RBP6.35□□□□□ -1.39
SCN9A-201ENST00000303354 DEFB4AO15263 64 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 DANCRP0C864 163 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 PAX2Q02962 417 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 SPAG8Q99932 426 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-201ENST00000303354 IFT22Q9H7X7 185 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 OTOFQ9HC10 1997 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 GPX4P36969 197 aaPredicted RBP6.35□□□□□ -1.39
SCN9A-201ENST00000303354 DEFB112Q30KQ8 113 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 COX19Q49B96 90 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 NAA38Q9BRA0 125 aaKnown RBP6.35□□□□□ -1.39
SCN9A-201ENST00000303354 WFDC1Q9HC57 220 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 H0YJW9 148 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 LINC00473A8K010 186 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 CTAG1AP78358 180 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 TMEM250H0YL14 139 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 IGHV4-59P01825 116 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE6Q13070 117 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 APRG1Q8IVJ8 170 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 F5P12259 2224 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 IGKV1-16P04430 117 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 EFNB3Q15768 340 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 RNASE13Q5GAN3 156 aaKnown RBP6.35□□□□□ -1.39
SCN9A-201ENST00000303354 TET1Q8NFU7 2136 aa6.35□□□□□ -1.39
SCN9A-201ENST00000303354 IGKV1OR2-108A0A075B7D4 117 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 SMIM13P0DJ93 91 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 SLC25A34Q6PIV7 304 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 ZSWIM8A7E2V4 1837 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 UBE2E1P51965 193 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 ZNF345Q14585 488 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 PSME4Q14997 1843 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 LYPD3O95274 346 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 CCL20P78556 96 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 C6orf226Q5I0X4 101 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 LCN12Q6JVE5 192 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 KNL1Q8NG31 2342 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 JPT2Q9H910 190 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 B3GALT5-AS1P59052 145 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 CBY1Q9Y3M2 126 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 181.4 ms