RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 IGHG4P01861 327 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 C1orf43Q9BWL3 253 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 TRAV25A0A0B4J276 109 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 PRCDQ00LT1 54 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 RMI2Q96E14 147 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 IMMP1LQ96LU5 166 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 LINC00477Q96M19 166 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 HAMPP81172 84 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 D6R8Y8 96 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 PSG1P11464 419 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 LSM4Q9Y4Z0 139 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 SAP30O75446 220 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 YPEL1O60688 119 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 WNT2P09544 360 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 ZAR1Q86SH2 424 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 YPEL2Q96QA6 119 aa11.64□□□□□ -0.55
CCDC88A-201ENST00000263630 TRBV7-1A0A0A6YYK4 115 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 NSUN5P1Q3KNT7 163 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BKO60814 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BJP06899 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BOP23527 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BBP33778 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BDP58876 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BCP62807 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 BSPH1Q075Z2 132 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST2H2BEQ16778 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BHQ93079 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 C1orf159Q96HA4 380 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BNQ99877 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BMQ99879 126 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 WNK3Q9BYP7 1800 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 IGLV1-36A0A0B4J1U3 117 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 NPIPB5A8MRT5 1133 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 TNRC6CQ9HCJ0 1690 aaKnown RBP11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 C3orf36Q3SXR2 165 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 ZNF501Q96CX3 271 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 RAMP1O60894 148 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 IGKV1D-16P01601 117 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 RFLNBQ8N5W9 214 aa11.63□□□□□ -0.55
CCDC88A-201ENST00000263630 SPTAN1Q13813 2472 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 PAPPAQ13219 1627 aa11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 A0A1W2PPV9 198 aa11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 TMEM14DPA8MWL7 114 aa11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 PSG3Q16557 428 aa11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 SPSB3Q6PJ21 355 aa11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 DEFB121Q5J5C9 76 aa11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 CSTL1Q9H114 145 aa11.62□□□□□ -0.55
CCDC88A-201ENST00000263630 PKDREJQ9NTG1 2253 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 DLEU1O43261 78 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 C17orf98A8MV24 154 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 HIST1H2BLQ99880 126 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 IGHV3OR16-8A0A075B7F1 116 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 NBL1P41271 181 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 A0A1W2PPI3 338 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 F8W1H4 67 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 ZNF138P52744 262 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 ZNF525Q8N782 197 aa11.61□□□□□ -0.55
CCDC88A-201ENST00000263630 A0A087X0K7 114 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 C12orf77C9JDV5 145 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 CGB3P0DN86 165 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 DSCR9P59020 149 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 CGB7P0DN87 165 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 PPDPFLQ8WWR9 84 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 SVIPQ8NHG7 77 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 SIGLEC1Q9BZZ2 1709 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 IGHV3-73A0A0B4J1V6 119 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 FOXS1O43638 330 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 PPIFP30405 207 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 EFNB3Q15768 340 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 TIMP3P35625 211 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 C1orf194Q5T5A4 169 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 CD200R1LQ6Q8B3 271 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 C22orf46C9J442 243 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 TRAV13-2A0A0B4J235 113 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 SPXQ9BT56 116 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 DTX4Q9Y2E6 619 aa11.6□□□□□ -0.55
CCDC88A-201ENST00000263630 SAA2-SAA4A0A096LPE2 208 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 FCN3O75636 299 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 SAA2P0DJI9 122 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 CRYBA2P53672 197 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 C8orf82Q6P1X6 216 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 C1QL4Q86Z23 238 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 BAALCQ8WXS3 180 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 TMEM133Q9H2Q1 129 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 HEPN1Q6WQI6 88 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 LINC01560Q8TB33 94 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 ATRXP46100 2492 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 A6NNC1 897 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.59□□□□□ -0.551e-9■■■■□ 23
CCDC88A-201ENST00000263630 IGFBP3P17936 291 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 C9orf50Q5SZB4 431 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 SMIM2Q9BVW6 85 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 TRBV5-3A0A0A0MS03 114 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 TRAV13-1A0A0B4J241 112 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 SRRM4A7MD48 611 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 IFITM3Q01628 133 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 ZNF474Q6S9Z5 364 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 SRXN1Q9BYN0 137 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 KIAA1551Q9HCM1 1747 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms