RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 OVOL3O00110 214 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 P01737 135 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 AMY1AP04745 511 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 S100A4P26447 101 aaKnown RBP9.26□□□□□ -0.93
VPS4A-201ENST00000254950 ATP5G3P48201 142 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 FAM210BQ96KR6 192 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 NAV3Q8IVL0 2385 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 FAM120AOSQ5T036 256 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 HIST1H2BAQ96A08 127 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 GSX1Q9H4S2 264 aaPredicted RBP9.26□□□□□ -0.93
VPS4A-201ENST00000254950 DSPP15924 2871 aaKnown RBP9.26□□□□□ -0.93
VPS4A-201ENST00000254950 HIVEP2P31629 2446 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 PSMB11A5LHX3 300 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 IGHV4-38-2P0DP08 117 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 FABP9Q0Z7S8 132 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 ICAM4Q14773 271 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 SPSB3Q6PJ21 355 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 BOD1L1Q8NFC6 3051 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 A0A1W2PPR1 153 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 TFPI2P48307 235 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 HABP2Q14520 560 aaPredicted RBP9.25□□□□□ -0.93
VPS4A-201ENST00000254950 USMG5Q96IX5 58 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 CARHSP1Q9Y2V2 147 aaKnown RBP9.25□□□□□ -0.93
VPS4A-201ENST00000254950 IGLC7A0M8Q6 106 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 PAX8Q06710 450 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 TMEM78Q5T7P6 136 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 LRRC75A-AS1Q8N1F1 130 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 SGMS2Q8NHU3 365 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 ELOVL1Q9BW60 279 aa9.25□□□□□ -0.93
VPS4A-201ENST00000254950 SEPSECSQ9HD40 501 aaKnown RBP9.25□□□□□ -0.93
VPS4A-201ENST00000254950 TRBV7-1A0A0A6YYK4 115 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 A0A1W2PRE2 83 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 SRD5A1P18405 259 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 ZNF738Q8NE65 137 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 IGFBPL1Q8WX77 278 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 PYYP10082 97 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 NDUFA6P56556 154 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 RNF212Q495C1 297 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 LEMD1Q68G75 181 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 RBPMS2Q6ZRY4 209 aaKnown RBP9.24□□□□□ -0.93
VPS4A-201ENST00000254950 GOLT1AQ6ZVE7 132 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 IGHV3-66A0A0C4DH42 116 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 NPIPB5A8MRT5 1133 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 G3V318 75 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 BRWD1-AS2P59051 145 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 SPATA31B1PQ5VZV4 182 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 BAGE3Q86Y29 109 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 GBGT1Q8N5D6 347 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 SAMD10Q9BYL1 202 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 FASNP49327 2511 aaKnown RBP9.24□□□□□ -0.93
VPS4A-201ENST00000254950 FAM223BA6NKX1 122 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 TNFRSF13BO14836 293 aaPredicted RBP9.24□□□□□ -0.93
VPS4A-201ENST00000254950 LOXL1Q08397 574 aaPredicted RBP9.24□□□□□ -0.93
VPS4A-201ENST00000254950 USF2Q15853 346 aaPredicted RBP9.24□□□□□ -0.93
VPS4A-201ENST00000254950 DEFB112Q30KQ8 113 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 ZNF329Q86UD4 541 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 FAM223AQ8IWN6 122 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 NPBQ8NG41 125 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 C2CD4CQ8TF44 421 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 TXN2Q99757 166 aa9.24□□□□□ -0.93
VPS4A-201ENST00000254950 SPINK4O60575 86 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 NDUFB8O95169 186 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 P0C879 139 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 TCL1AP56279 114 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 OR10J6PQ8NGY7 276 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 VN1R17PQ8TDU5 208 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 TRAV5A0A0B4J249 113 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 SCO2A0A1W2PP80 73 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 PAX1P15863 534 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 SRSF3P84103 164 aaKnown RBP9.23□□□□□ -0.93
VPS4A-201ENST00000254950 EIF4EBP1Q13541 118 aaPredicted RBP9.23□□□□□ -0.93
VPS4A-201ENST00000254950 TM4SF20Q53R12 229 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 TEX38Q6PEX7 206 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 RITA1Q96K30 269 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 PEX7O00628 323 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 CTRB1P17538 263 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 CTRB2Q6GPI1 263 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 GPR82Q96P67 336 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 CLEC5AQ9NY25 188 aa9.23□□□□□ -0.93
VPS4A-201ENST00000254950 CFAP47Q6ZTR5 3102 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 CD5P06127 495 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 CENPWQ5EE01 88 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 ODF3BA8MYP8 253 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 GGCTO75223 188 aaKnown RBP9.22□□□□□ -0.93
VPS4A-201ENST00000254950 ORM1P02763 201 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 PLA2G2AP14555 144 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 C19orf35Q6ZS72 473 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 SGK494Q96LW2 274 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 SLC25A39Q9BZJ4 359 aaPredicted RBP9.22□□□□□ -0.93
VPS4A-201ENST00000254950 Q9H3A6 140 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 DCHS1Q96JQ0 3298 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 TOMM40O96008 361 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 MEOX2P50222 304 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 OR2D3Q8NGH3 330 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 NAGKQ9UJ70 344 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 ARHGAP32A7KAX9 2087 aa9.22□□□□□ -0.93
VPS4A-201ENST00000254950 USP9XQ93008 2570 aaPredicted RBP9.21□□□□□ -0.93
VPS4A-201ENST00000254950 A0A1B0GW64 132 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 IGLV2-23P01705 113 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 COX19Q49B96 90 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms