RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 BAGE2Q86Y30 109 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 KIR3DL3Q8N743 410 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 ESDP10768 282 aa12.84□□□□□ -0.35
UBE3D-201ENST00000237186 PSG1P11464 419 aa12.84□□□□□ -0.35
UBE3D-201ENST00000237186 TMEM190Q8WZ59 177 aa12.84□□□□□ -0.35
UBE3D-201ENST00000237186 IGHV3-21A0A0B4J1V1 117 aa12.83□□□□□ -0.36
UBE3D-201ENST00000237186 OOSP1A8MZH6 123 aa12.83□□□□□ -0.36
UBE3D-201ENST00000237186 PLXNB1O43157 2135 aa12.83□□□□□ -0.36
UBE3D-201ENST00000237186 MGST1P10620 155 aaKnown RBP12.83□□□□□ -0.36
UBE3D-201ENST00000237186 RANP62826 216 aaKnown RBP12.83□□□□□ -0.36
UBE3D-201ENST00000237186 MBD6Q96DN6 1003 aa12.83□□□□□ -0.36
UBE3D-201ENST00000237186 TMEM14CQ9P0S9 112 aa12.83□□□□□ -0.36
UBE3D-201ENST00000237186 K7EIM0 57 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 CNIH1O95406 144 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 IER3P46695 156 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 Q0VG73 95 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 TMEM256Q8N2U0 113 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 CHRDL1Q9BU40 450 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 HIGD1AQ9Y241 93 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 HILPDAQ9Y5L2 63 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 PGPA6NDG6 321 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 SNURFLB1AK76 121 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 IGKV1-17P01599 117 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 FRMD6-AS1P0C7T7 363 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 PKIAP61925 76 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 FXYD3Q14802 87 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 C5orf64Q2M2E5 130 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 MINOS1Q5TGZ0 78 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 CCDC144NLQ6NUI1 221 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 LHFPL4Q7Z7J7 247 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 C7orf69Q9H7B7 122 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 MRPL27Q9P0M9 148 aaKnown RBP12.82□□□□□ -0.36
UBE3D-201ENST00000237186 TP53TG3Q9ULZ0 132 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 MINOS1-NBL1R4GNA1 71 aa12.82□□□□□ -0.36
UBE3D-201ENST00000237186 A0A1W2PPR1 153 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 A6NNC1 897 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 ZNF705GA8MUZ8 300 aaPredicted RBP12.81□□□□□ -0.36
UBE3D-201ENST00000237186 PAX1P15863 534 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 CRISP2P16562 243 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 EBI3Q14213 229 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 RASL11AQ6T310 242 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 TMEM136Q6ZRR5 245 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 C5orf17Q8NAS9 161 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 RASL11BQ9BPW5 248 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 MLST8Q9BVC4 326 aa12.81□□□□□ -0.36
UBE3D-201ENST00000237186 GSX1Q9H4S2 264 aaPredicted RBP12.81□□□□□ -0.36
UBE3D-201ENST00000237186 TRAV20A0A0B4J274 112 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 IZUMO1RA6ND01 250 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 NUPR1O60356 82 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 SLC25A5P05141 298 aaKnown RBP12.8□□□□□ -0.36
UBE3D-201ENST00000237186 KLRD1Q13241 179 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 ZNF562Q6V9R5 426 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 GRAMD2BQ96HH9 432 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 ATG101Q9BSB4 218 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 SLC25A39Q9BZJ4 359 aaPredicted RBP12.8□□□□□ -0.36
UBE3D-201ENST00000237186 TRAV34A0A0B4J273 112 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 RD3LP0DJH9 198 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 PAFAH1B2P68402 229 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 ZNF600Q6ZNG1 722 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 Q8N6K4 173 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 NUDT10Q8NFP7 164 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 WIPF2Q8TF74 440 aaPredicted RBP12.8□□□□□ -0.36
UBE3D-201ENST00000237186 BLNKQ8WV28 456 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 NUDT11Q96G61 164 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 GPR82Q96P67 336 aa12.8□□□□□ -0.36
UBE3D-201ENST00000237186 A0A1B0GUS0 222 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 NPIPB5A8MRT5 1133 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 GATCO43716 136 aaKnown RBP12.79□□□□□ -0.36
UBE3D-201ENST00000237186 TOMM40O96008 361 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 AMY1AP04745 511 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 HIST1H1EP10412 219 aaKnown RBP12.79□□□□□ -0.36
UBE3D-201ENST00000237186 UBE2G1P62253 170 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 GNG5P63218 68 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 VMO1Q7Z5L0 202 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 NHLRC2Q8NBF2 726 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 FAM168AQ92567 244 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 TMEM68Q96MH6 324 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 SERTAD4Q9NUC0 356 aa12.79□□□□□ -0.36
UBE3D-201ENST00000237186 GRIFINA4D1Z8 144 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 TSTD3H0UI37 97 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 HLA-DQA1P01909 254 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 ZFP36P26651 326 aaKnown RBP12.78□□□□□ -0.36
UBE3D-201ENST00000237186 LINC00310P59036 64 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 LYZP61626 148 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 CMTM2Q8TAZ6 248 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 FMC1Q96HJ9 113 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 ZNF48Q96MX3 618 aaPredicted RBP12.78□□□□□ -0.36
UBE3D-201ENST00000237186 Q9H3A6 140 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 TCRAP04437 139 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 IQCJQ1A5X6 159 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 C9orf152Q5JTZ5 239 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 RBM14Q96PK6 669 aaKnown RBP12.78□□□□□ -0.36
UBE3D-201ENST00000237186 OTORQ9NRC9 128 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 NAT8BQ9UHF3 227 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 RNF24Q9Y225 148 aa12.78□□□□□ -0.36
UBE3D-201ENST00000237186 TRAV30A0A087WSZ9 112 aa12.77□□□□□ -0.37
UBE3D-201ENST00000237186 LTAP01374 205 aa12.77□□□□□ -0.37
UBE3D-201ENST00000237186 SNRPCP09234 159 aaKnown RBP12.77□□□□□ -0.37
UBE3D-201ENST00000237186 HOXB4P17483 251 aaPredicted RBP12.77□□□□□ -0.37
UBE3D-201ENST00000237186 UQCRFS1P47985 274 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms