RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CTLA4P16410 223 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 REG1BP48304 166 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 NTHL1P78549 312 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 DLK2Q6UY11 383 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 C1orf122Q6ZSJ8 110 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TSSC4Q9Y5U2 329 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TCRBV5S1A1TA0A578 114 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 PAGE4O60829 102 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 C1QTNF9P0C862 333 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 EFNA4P52798 201 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 MINOS1Q5TGZ0 78 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 SPINK14Q6IE38 97 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 THAP8Q8NA92 274 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 ATOH8Q96SQ7 321 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TOMM7Q9P0U1 55 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 MINOS1-NBL1R4GNA1 71 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 FAM223BA6NKX1 122 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 HYPMO75409 117 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 PRTN3P24158 256 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CRYBB2P43320 205 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 C1orf229Q6ZS94 237 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 FAM223AQ8IWN6 122 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 APCP25054 2843 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 PRR32B1ATL7 298 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TIAF1O95411 115 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 PTGDSP41222 190 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 MBNL2Q5VZF2 373 aaKnown RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 MARCH3Q86UD3 253 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 PLSCR2Q9NRY7 297 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 IGSF10Q6WRI0 2623 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 SHISA3A0PJX4 238 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 RPL27AP46776 148 aaKnown RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 HSD52Q0P140 79 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 UBE2V1Q13404 147 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 OCIAD2Q56VL3 154 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 OTPQ5XKR4 325 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF524Q96C55 264 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 MS4A6EQ96DS6 147 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SNHG12Q9BXW3 62 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 COL5A1P20908 1838 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 PLPP3O14495 311 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 ICOSLGO75144 302 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CX3CL1P78423 397 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 LCN2P80188 198 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 KLF9Q13886 244 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SLC25A53Q5H9E4 307 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 IBA57Q5T440 356 aaKnown RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 FANCD2OSQ96PS1 177 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 IGHV1OR15-9A0A0B4J2B8 117 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 NKX2-6A6NCS4 301 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 M0R2P5 195 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SRSF7Q16629 238 aaKnown RBP eCLIP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 C10orf111Q8N326 155 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CHCHD5Q9BSY4 110 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 C21orf62Q9NYP8 219 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SMAD5-AS1Q9Y6J3 95 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 RAI1Q7Z5J4 1906 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 KLK8O60259 260 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 IL18BPO95998 194 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM50BP56557 158 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 C5orf47Q569G3 176 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 C1orf220Q5T0J3 134 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE2AQ6NT46 116 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 LINC01551Q86U37 167 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 FAM90A1Q86YD7 464 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SPTSSBQ8NFR3 76 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 PPDPFLQ8WWR9 84 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 TM4SF18Q96CE8 201 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CMC2Q9NRP2 79 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CEACAM18A8MTB9 384 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 ETV2O00321 342 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 INSP01308 110 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 LIFP15018 202 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 AGAP20933 346 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM170BQ5T4T1 132 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 GOLT1AQ6ZVE7 132 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 RTN4RQ9BZR6 473 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 V9GYY9 64 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 PRYO14603 147 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 UPK3AO75631 287 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 THBDP07204 575 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 ANKRD34AQ69YU3 496 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SPSB3Q6PJ21 355 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SOSTQ9BQB4 213 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 H3BTX0 84 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 HIKESHIQ53FT3 197 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 C2orf82Q6UX34 121 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 RNASEH2CQ8TDP1 164 aaKnown RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CNRIP1Q96F85 164 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SCGB3A1Q96QR1 104 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 TRBV7-1A0A0A6YYK4 115 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PQD3 144 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE12JA6NER3 117 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 LIM2P55344 173 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE1Q13065 139 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE4Q13068 117 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE5Q13069 117 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE6Q13070 117 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 NPWQ8N729 165 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 PGLYRP3Q96LB9 341 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms