RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 NOXA1Q86UR1 476 aa11.74□□□□□ -0.53
LIG3-215ENST00000592690 WWC2-AS2Q96NR7 200 aa11.74□□□□□ -0.53
LIG3-215ENST00000592690 GINS3Q9BRX5 216 aa11.74□□□□□ -0.53
LIG3-215ENST00000592690 MAGT1Q9H0U3 335 aa11.74□□□□□ -0.53
LIG3-215ENST00000592690 ETFRF1Q6IPR1 90 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 COQ8AQ8NI60 647 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 S100ZQ8WXG8 99 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 ST8SIA2Q92186 375 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 ACY3Q96HD9 319 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 ZMAT4Q9H898 229 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 PTTG2Q9NZH5 202 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 UBQLN2Q9UHD9 624 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 STAB2Q8WWQ8 2551 aa11.73□□□□□ -0.53
LIG3-215ENST00000592690 TRAV6A0A075B6T7 132 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 TRAV30A0A087WSZ9 112 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 IGHV3-66A0A0C4DH42 116 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 SCGB2A1O75556 95 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 TCRBP04435 133 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 IFNA4P05014 189 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 OR10J1P30954 320 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 LILRB2Q8N423 598 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 OR1S2Q8NGQ3 325 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 NPIPB3Q92617 1050 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 VSIRQ9H7M9 311 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 TBC1D24Q9ULP9 559 aa11.72□□□□□ -0.53
LIG3-215ENST00000592690 IGKV3-7A0A075B6H7 116 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 WRBO00258 174 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 SYNGR2O43760 224 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 MED6O75586 246 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 ATP5IP56385 69 aaPredicted RBP11.71□□□□□ -0.53
LIG3-215ENST00000592690 ODF3L2Q3SX64 289 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 FAM90A2PQ658T7 463 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 CITED4Q96RK1 184 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 NUDT15Q9NV35 164 aa11.71□□□□□ -0.53
LIG3-215ENST00000592690 KMT2CQ8NEZ4 4911 aaKnown RBP11.7□□□□□ -0.54
LIG3-215ENST00000592690 YPEL3P61236 119 aaPredicted RBP11.7□□□□□ -0.54
LIG3-215ENST00000592690 TCF24Q7RTU0 167 aa11.7□□□□□ -0.54
LIG3-215ENST00000592690 MITD1Q8WV92 249 aa11.7□□□□□ -0.54
LIG3-215ENST00000592690 RETNQ9HD89 108 aa11.7□□□□□ -0.54
LIG3-215ENST00000592690 PAIP2BQ9ULR5 123 aaKnown RBP11.7□□□□□ -0.54
LIG3-215ENST00000592690 OR4C46A6NHA9 309 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 IFNA21P01568 189 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 NPPCP23582 126 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 CRYBB3P26998 211 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 TFPI2P48307 235 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 GAMTQ14353 236 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 GBGT1Q8N5D6 347 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 OR4D5Q8NGN0 318 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 SLC35E1Q96K37 410 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 CIB3Q96Q77 187 aaPredicted RBP11.69□□□□□ -0.54
LIG3-215ENST00000592690 METTL26Q96S19 204 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 SPATA25Q9BR10 227 aa11.69□□□□□ -0.54
LIG3-215ENST00000592690 H3BP45 60 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 DFFBO76075 338 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 TOMM40O96008 361 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 BMI1P35226 326 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 GPX4P36969 197 aaPredicted RBP11.68□□□□□ -0.54
LIG3-215ENST00000592690 NKX2-1P43699 371 aaPredicted RBP11.68□□□□□ -0.54
LIG3-215ENST00000592690 POLR2GP62487 172 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIG3-215ENST00000592690 RAB11AP62491 216 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 ID3Q02535 119 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 ASAH1Q13510 395 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 ZNF846Q147U1 533 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 Q8WTZ3 238 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 SEC22CQ9BRL7 303 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 WDR12Q9GZL7 423 aaKnown RBP11.68□□□□□ -0.54
LIG3-215ENST00000592690 NBEAL2Q6ZNJ1 2754 aa11.68□□□□□ -0.54
LIG3-215ENST00000592690 IGKV1D-37A0A075B6S9 117 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 FAM240BA0A1B0GVZ2 78 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 PRSS46E5RG02 174 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 CCSO14618 274 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 SSSCA1O60232 199 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 UPK1BO75841 260 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 IL4P05112 153 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 H2AFB2P0C5Z0 115 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 IFITM3Q01628 133 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 USF2Q15853 346 aaPredicted RBP11.67□□□□□ -0.54
LIG3-215ENST00000592690 IAH1Q2TAA2 248 aaPredicted RBP11.67□□□□□ -0.54
LIG3-215ENST00000592690 SPANXN5Q5MJ07 72 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 TMEM231Q9H6L2 316 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 BATF3Q9NR55 127 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 U3KQE9 123 aa11.67□□□□□ -0.54
LIG3-215ENST00000592690 A0A1W2PS18 150 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 ZFP92A6NM28 416 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 SCGB1D2O95969 90 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 RD3LP0DJH9 198 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 PSG1P11464 419 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 P2RY1P47900 373 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 RPP30P78346 268 aaKnown RBP11.66□□□□□ -0.54
LIG3-215ENST00000592690 ZNF90Q03938 601 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 ZNF124Q15973 351 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 MZT2BQ6NZ67 158 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 WFDC3Q8IUB2 231 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 ZBTB8BQ8NAP8 495 aaPredicted RBP11.66□□□□□ -0.54
LIG3-215ENST00000592690 FAM110AQ9BQ89 295 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 GGTLC1Q9BX51 225 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 MS4A6AQ9H2W1 248 aa11.66□□□□□ -0.54
LIG3-215ENST00000592690 IGKV1OR2-108A0A075B7D4 117 aa11.65□□□□□ -0.54
LIG3-215ENST00000592690 LOC102724200A0A096LPH7 203 aaPredicted RBP11.65□□□□□ -0.54
LIG3-215ENST00000592690 CD5P06127 495 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms