RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OR10R2Q8NGX6 335 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 APH1BQ8WW43 257 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 C16orf74Q96GX8 76 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 VSIG2Q96IQ7 327 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 CRXO43186 299 aaPredicted RBP10.72□□□□□ -0.69
VPS53-218ENST00000575207 KRASP01116 189 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 FCGR1AP12314 374 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 CLDN12P56749 244 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 HSD17B12Q53GQ0 312 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 CNIH2Q6PI25 160 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 CMTM1Q8IZ96 169 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 LGALS14Q8TCE9 139 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 LINC00467Q9BRT7 94 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 WDR12Q9GZL7 423 aaKnown RBP10.72□□□□□ -0.69
VPS53-218ENST00000575207 DNAJC4Q9NNZ3 241 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 AP4S1Q9Y587 144 aa10.72□□□□□ -0.69
VPS53-218ENST00000575207 IRGMA1A4Y4 181 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 BUB3O43684 328 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 IGKV1-17P01599 117 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 IGLV2-11P01706 119 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 C2orf76Q3KRA6 126 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 LRTM2Q8N967 370 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 FAM3DQ96BQ1 224 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 CENPNQ96H22 339 aaPredicted RBP10.71□□□□□ -0.69
VPS53-218ENST00000575207 MRPL36Q9P0J6 103 aaKnown RBP10.71□□□□□ -0.69
VPS53-218ENST00000575207 DOK5Q9P104 306 aa10.71□□□□□ -0.69
VPS53-218ENST00000575207 M0R2Z0 102 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 G6PCP35575 357 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 GYS2P54840 703 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 ODF1Q14990 250 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 SPINK13Q1W4C9 94 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 TIGITQ495A1 244 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 AADACL3Q5VUY0 350 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 BPIFB6Q8NFQ5 453 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 SLC7A6OSQ96CW6 309 aaPredicted RBP10.7□□□□□ -0.7
VPS53-218ENST00000575207 GFI1Q99684 422 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 RAB22AQ9UL26 194 aa10.7□□□□□ -0.7
VPS53-218ENST00000575207 TMEM272A0A1B0GTI8 110 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 GSTZ1O43708 216 aaPredicted RBP10.69□□□□□ -0.7
VPS53-218ENST00000575207 HTN1P15515 57 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 EVI2AP22794 236 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 ERHP84090 104 aaKnown RBP10.69□□□□□ -0.7
VPS53-218ENST00000575207 PRCDQ00LT1 54 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 TMEM144Q7Z5S9 345 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 OR4X1Q8NH49 305 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 TSC22D3Q99576 134 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 KLK11Q9UBX7 282 aa10.69□□□□□ -0.7
VPS53-218ENST00000575207 ELF5Q9UKW6 265 aaPredicted RBP10.69□□□□□ -0.7
VPS53-218ENST00000575207 EI24O14681 340 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 ELK1P19419 428 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 TAS2R60P59551 318 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 ARPC4P59998 168 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 TBCEQ15813 527 aaPredicted RBP10.68□□□□□ -0.7
VPS53-218ENST00000575207 BAP18Q8IXM2 172 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 MS4A15Q8N5U1 240 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 Q8WTZ3 238 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 TMEM203Q969S6 136 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 LINC01587Q99440 93 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 SLC5A7Q9GZV3 580 aa10.68□□□□□ -0.7
VPS53-218ENST00000575207 TRAV30A0A087WSZ9 112 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 GAGE12BA1L429 117 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 SOCS3O14543 225 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 WBP4O75554 376 aaKnown RBP10.67□□□□□ -0.7
VPS53-218ENST00000575207 GAGE7O76087 117 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 GAGE12FP0CL80 117 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 GAGE12GP0CL81 117 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 GAGE12IP0CL82 117 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 ZNF493Q6ZR52 646 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 RBPMSQ93062 196 aaKnown RBP10.67□□□□□ -0.7
VPS53-218ENST00000575207 GPR146Q96CH1 333 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 TMEM80Q96HE8 168 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 RPRMQ9NS64 109 aa10.67□□□□□ -0.7
VPS53-218ENST00000575207 ZNF98A6NK75 572 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 CORTO00230 105 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 IL4P05112 153 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 SFXN4Q6P4A7 337 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 LYPD5Q6UWN5 251 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 ZNF818PQ6ZRF7 136 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 GPR141Q7Z602 305 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 TMEM256Q8N2U0 113 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 C10orf126Q8N4M7 172 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 OR11H7Q8NGC8 314 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 RNASE8Q8TDE3 154 aaKnown RBP10.66□□□□□ -0.7
VPS53-218ENST00000575207 TMEM263Q8WUH6 116 aaKnown RBP10.66□□□□□ -0.7
VPS53-218ENST00000575207 FCAMRQ8WWV6 532 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 ANXA10Q9UJ72 324 aa10.66□□□□□ -0.7
VPS53-218ENST00000575207 AK6Q9Y3D8 172 aaKnown RBP10.66□□□□□ -0.7
VPS53-218ENST00000575207 ISLRO14498 428 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 UCHL1P09936 223 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 F2RP25116 425 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 FCGR2CP31995 323 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 SNCAP37840 140 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 OPRK1P41145 380 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 ETV6P41212 452 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 LPAR6P43657 344 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 DHODHQ02127 395 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 LCE2DQ5TA82 110 aaPredicted RBP10.65□□□□□ -0.7
VPS53-218ENST00000575207 TSPAN14Q8NG11 270 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 TMPRSS5Q9H3S3 457 aa10.65□□□□□ -0.7
VPS53-218ENST00000575207 TRAV12-2A0A075B6T6 113 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms