RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 NIPSNAP3BQ9BS92 247 aa14.09□□□□□ -0.15
CCDC40-206ENST00000572083 RFNGQ9Y644 331 aa14.09□□□□□ -0.15
CCDC40-206ENST00000572083 HLA-DRB4X5D2U9 266 aa14.09□□□□□ -0.15
CCDC40-206ENST00000572083 DEFB1P60022 68 aa14.08□□□□□ -0.16
CCDC40-206ENST00000572083 GDF5OSQ5U4N7 250 aa14.08□□□□□ -0.16
CCDC40-206ENST00000572083 TMEM88Q6PEY1 159 aa14.08□□□□□ -0.16
CCDC40-206ENST00000572083 PDCD10Q9BUL8 212 aa14.08□□□□□ -0.16
CCDC40-206ENST00000572083 NRN1Q9NPD7 142 aa14.08□□□□□ -0.16
CCDC40-206ENST00000572083 P0C879 139 aa14.07□□□□□ -0.16
CCDC40-206ENST00000572083 PRSS3P35030 304 aa14.07□□□□□ -0.16
CCDC40-206ENST00000572083 USF2Q15853 346 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-206ENST00000572083 ENY2Q9NPA8 101 aa14.07□□□□□ -0.16
CCDC40-206ENST00000572083 TRAV30A0A087WSZ9 112 aa14.06□□□□□ -0.16
CCDC40-206ENST00000572083 TEX48A0A1B0GUV7 120 aa14.06□□□□□ -0.16
CCDC40-206ENST00000572083 SMIM9A6NGZ8 99 aa14.06□□□□□ -0.16
CCDC40-206ENST00000572083 IGLC1P0CG04 106 aa14.06□□□□□ -0.16
CCDC40-206ENST00000572083 RPL5P46777 297 aaKnown RBP14.06□□□□□ -0.16
CCDC40-206ENST00000572083 SIGLEC15Q6ZMC9 328 aa14.06□□□□□ -0.16
CCDC40-206ENST00000572083 SAMD12Q8N8I0 201 aa14.06□□□□□ -0.16
CCDC40-206ENST00000572083 VCX3BQ9H321 246 aa14.06□□□□□ -0.16
CCDC40-206ENST00000572083 IL4P05112 153 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 TGFBR1P36897 503 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 RND2P52198 227 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 UCP3P55916 312 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 DHODHQ02127 395 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 Q8N1X5 172 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 OR1S2Q8NGQ3 325 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 Q8WTZ3 238 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 TP53RKQ96S44 253 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 TMED3Q9Y3Q3 217 aa14.05□□□□□ -0.16
CCDC40-206ENST00000572083 PI3P19957 117 aa14.04□□□□□ -0.16
CCDC40-206ENST00000572083 OR10J1P30954 320 aa14.04□□□□□ -0.16
CCDC40-206ENST00000572083 NKX2-1P43699 371 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-206ENST00000572083 BSXQ3C1V8 233 aa14.04□□□□□ -0.16
CCDC40-206ENST00000572083 YTHDF1Q9BYJ9 559 aaKnown RBP14.04□□□□□ -0.16
CCDC40-206ENST00000572083 SEPSECSQ9HD40 501 aaKnown RBP14.04□□□□□ -0.16
CCDC40-206ENST00000572083 A0A0G2JRQ6 117 aa14.03□□□□□ -0.16
CCDC40-206ENST00000572083 PGAM2P15259 253 aa14.03□□□□□ -0.16
CCDC40-206ENST00000572083 PRSS54Q6PEW0 395 aa14.03□□□□□ -0.16
CCDC40-206ENST00000572083 ZNF709Q8N972 641 aa14.03□□□□□ -0.16
CCDC40-206ENST00000572083 GPX8Q8TED1 209 aa14.03□□□□□ -0.16
CCDC40-206ENST00000572083 RAB26Q9ULW5 256 aa14.03□□□□□ -0.16
CCDC40-206ENST00000572083 YTHDF2Q9Y5A9 579 aaKnown RBP14.03□□□□□ -0.16
CCDC40-206ENST00000572083 LOC102723971A0A1B0GUV8 181 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 RPS10-NUDT3A0A1W2PQS6 291 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 BUB3O43684 328 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 TMEM127O75204 238 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 YPEL3P61236 119 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-206ENST00000572083 DAD1P61803 113 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 OXA1LQ15070 435 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 C6orf223Q8N319 242 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 ATG101Q9BSB4 218 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 SLC35B3Q9H1N7 401 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 SCRT2Q9NQ03 307 aa14.02□□□□□ -0.17
CCDC40-206ENST00000572083 M0QYG6 137 aa14.01□□□□□ -0.17
CCDC40-206ENST00000572083 PIGPP57054 158 aa14.01□□□□□ -0.17
CCDC40-206ENST00000572083 TRIM16LQ309B1 348 aa14.01□□□□□ -0.17
CCDC40-206ENST00000572083 OR4B1Q8NGF8 309 aa14.01□□□□□ -0.17
CCDC40-206ENST00000572083 LINC00052Q96N35 136 aa14.01□□□□□ -0.17
CCDC40-206ENST00000572083 SAV1Q9H4B6 383 aaPredicted RBP14.01□□□□□ -0.17
CCDC40-206ENST00000572083 NBDYA0A0U1RRE5 68 aa14□□□□□ -0.17
CCDC40-206ENST00000572083 GSTZ1O43708 216 aaPredicted RBP14□□□□□ -0.17
CCDC40-206ENST00000572083 HBE1P02100 147 aa14□□□□□ -0.17
CCDC40-206ENST00000572083 FAM3BP58499 235 aaPredicted RBP14□□□□□ -0.17
CCDC40-206ENST00000572083 RND3P61587 244 aa14□□□□□ -0.17
CCDC40-206ENST00000572083 GSG1LQ6UXU4 331 aa14□□□□□ -0.17
CCDC40-206ENST00000572083 C15orf53Q8NAA6 179 aa14□□□□□ -0.17
CCDC40-206ENST00000572083 RNASE11Q8TAA1 199 aaKnown RBP14□□□□□ -0.17
CCDC40-206ENST00000572083 C7orf50Q9BRJ6 194 aaKnown RBP14□□□□□ -0.17
CCDC40-206ENST00000572083 GOLT1BQ9Y3E0 138 aa14□□□□□ -0.17
CCDC40-206ENST00000572083 C3orf85A0A1B0GTC6 90 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 ATG12O94817 140 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 SLC25A4P12235 298 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 RCVRNP35243 200 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 HTR2BP41595 481 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 NEDD8Q15843 81 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 SP6Q3SY56 376 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 FOXI2Q6ZQN5 318 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 SNX29P2Q8IUI4 249 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 CROCCP3Q8IVE0 287 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 C1orf158Q8N1D5 194 aa13.99□□□□□ -0.17
CCDC40-206ENST00000572083 RRNAD1Q96FB5 475 aaKnown RBP13.99□□□□□ -0.17
CCDC40-206ENST00000572083 WDR12Q9GZL7 423 aaKnown RBP13.99□□□□□ -0.17
CCDC40-206ENST00000572083 TOMM40O96008 361 aa13.98□□□□□ -0.17
CCDC40-206ENST00000572083 RORCP51449 518 aa13.98□□□□□ -0.17
CCDC40-206ENST00000572083 OR51G1Q8NGK1 321 aa13.98□□□□□ -0.17
CCDC40-206ENST00000572083 ZNRF2Q8NHG8 242 aa13.98□□□□□ -0.17
CCDC40-206ENST00000572083 ZNF486Q96H40 463 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-206ENST00000572083 ACY3Q96HD9 319 aa13.98□□□□□ -0.17
CCDC40-206ENST00000572083 HEYLQ9NQ87 328 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-206ENST00000572083 NXPH3O95157 252 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 RD3LP0DJH9 198 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 RPS19P39019 145 aaKnown RBP13.97□□□□□ -0.17
CCDC40-206ENST00000572083 SPCS3P61009 180 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 ZNF79Q15937 498 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 RRN3P1Q2M238 152 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 C2orf83Q53S99 150 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 SPATA12Q7Z6I5 190 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 COQ8AQ8NI60 647 aa13.97□□□□□ -0.17
CCDC40-206ENST00000572083 NPIPB3Q92617 1050 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms