RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TMEM116Q8NCL8 245 aa8□□□□□ -1.13
VPS53-207ENST00000570510 OR4D10Q8NGI6 311 aa8□□□□□ -1.13
VPS53-207ENST00000570510 RBPMSQ93062 196 aaKnown RBP8□□□□□ -1.13
VPS53-207ENST00000570510 TRIM63Q969Q1 353 aa8□□□□□ -1.13
VPS53-207ENST00000570510 GPHA2Q96T91 129 aa8□□□□□ -1.13
VPS53-207ENST00000570510 TXN2Q99757 166 aa8□□□□□ -1.13
VPS53-207ENST00000570510 C7orf50Q9BRJ6 194 aaKnown RBP8□□□□□ -1.13
VPS53-207ENST00000570510 RHPN1-AS1Q9BWJ2 59 aa8□□□□□ -1.13
VPS53-207ENST00000570510 NAA60Q9H7X0 242 aa8□□□□□ -1.13
VPS53-207ENST00000570510 SMPXQ9UHP9 88 aa8□□□□□ -1.13
VPS53-207ENST00000570510 OR51B2Q9Y5P1 312 aa8□□□□□ -1.13
VPS53-207ENST00000570510 F11RQ9Y624 299 aaKnown RBP8□□□□□ -1.13
VPS53-207ENST00000570510 TMEM56-RWDD3S4R434 201 aa8□□□□□ -1.13
VPS53-207ENST00000570510 ELOA3CA0A087WX78 387 aaPredicted RBP7.99□□□□□ -1.13
VPS53-207ENST00000570510 IGHV3-49A0A0A0MS15 119 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 A0A1B0GW64 132 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 CGB1A6NKQ9 187 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 C15orf62A8K5M9 175 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 CORTO00230 105 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 G6PCP35575 357 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 DEFB131AP59861 70 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 TNP2Q05952 138 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 C12orf74Q32Q52 190 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 RNF212Q495C1 297 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 PYDC2Q56P42 97 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 OR51S1Q8NGJ8 323 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 MARCH1Q8TCQ1 289 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 GLYATL2Q8WU03 294 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 RTBDNQ9BSG5 229 aaPredicted RBP7.99□□□□□ -1.13
VPS53-207ENST00000570510 TBC1D24Q9ULP9 559 aa7.99□□□□□ -1.13
VPS53-207ENST00000570510 IGHV7-4-1A0A0J9YVY3 117 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 DFFBO76075 338 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 IGKV1-39P01597 117 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 IGKV1D-39P04432 117 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 CD5P06127 495 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 OR13C7P0DN81 318 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 AKR1C2P52895 323 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 SUB1P53999 127 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS53-207ENST00000570510 ZNF79Q15937 498 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 TRIM16LQ309B1 348 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 Q56UQ5 140 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 TMEM128Q5BJH2 165 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 SLC25A24Q6NUK1 477 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 MORN3Q6PF18 240 aaPredicted RBP7.98□□□□□ -1.13
VPS53-207ENST00000570510 NOXA1Q86UR1 476 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 MRGPRFQ96AM1 343 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 TP53RKQ96S44 253 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 PDCD10Q9BUL8 212 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 SRRQ9GZT4 340 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.98□□□□□ -1.13
VPS53-207ENST00000570510 TMED3Q9Y3Q3 217 aa7.98□□□□□ -1.13
VPS53-207ENST00000570510 TRAV3A0A0B4J244 114 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 A0A0B4J2A0 478 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 CENPXA8MT69 81 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 CHEK1O14757 476 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 SPP1P10451 314 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 SLC25A6P12236 298 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 PPP5CP53041 499 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 SPCS3P61009 180 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 RELQ04864 619 aaPredicted RBP7.97□□□□□ -1.13
VPS53-207ENST00000570510 WT1-ASQ06250 92 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 RNASE12Q5GAN4 147 aaKnown RBP7.97□□□□□ -1.13
VPS53-207ENST00000570510 LRTM2Q8N967 370 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 MCUBQ9NWR8 336 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 SHPKQ9UHJ6 478 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 CELA1Q9UNI1 258 aa7.97□□□□□ -1.13
VPS53-207ENST00000570510 IGHV3OR16-13A0A075B7E8 117 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 TRAV14DV4A0A0A6YYC5 116 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 IGHV3-21A0A0B4J1V1 117 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 IGHV3-74A0A0B4J1X5 117 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 A0A0B4J293 547 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 ZNF705EA8MWA4 302 aaPredicted RBP7.96□□□□□ -1.14
VPS53-207ENST00000570510 SCGB2A1O75556 95 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 IGKV1-5P01602 117 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 OR5AC1P0C628 307 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 TCF24Q7RTU0 167 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 SPATA12Q7Z6I5 190 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 LGI3Q8N145 548 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 FAM210BQ96KR6 192 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 ATG101Q9BSB4 218 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 SCRT1Q9BWW7 348 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 BATF3Q9NR55 127 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 CLEC5AQ9NY25 188 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 C21orf62Q9NYP8 219 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 RABAC1Q9UI14 185 aa7.96□□□□□ -1.14
VPS53-207ENST00000570510 A0A1B0GU03 582 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 F8W735 103 aaPredicted RBP7.95□□□□□ -1.14
VPS53-207ENST00000570510 NUPL2O15504 423 aaKnown RBP7.95□□□□□ -1.14
VPS53-207ENST00000570510 ST8SIA3O43173 380 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 SPART-AS1P0CW21 52 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 HTN3P15516 51 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 PI3P19957 117 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 SNCAP37840 140 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 INPP1P49441 399 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 CCR6P51684 374 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 TRIQKQ629K1 86 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 C6orf223Q8N319 242 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 DUSP18Q8NEJ0 188 aa7.95□□□□□ -1.14
VPS53-207ENST00000570510 RNASE11Q8TAA1 199 aaKnown RBP7.95□□□□□ -1.14
VPS53-207ENST00000570510 S100ZQ8WXG8 99 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms