RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 BPIFCQ8NFQ6 507 aa23.82■■□□□ 1.4
CTCF-203ENST00000566078 LRRC20Q8TCA0 184 aa23.82■■□□□ 1.4
CTCF-203ENST00000566078 CXorf58Q96LI9 332 aa23.82■■□□□ 1.4
CTCF-203ENST00000566078 TRGV9Q99603 122 aa23.82■■□□□ 1.4
CTCF-203ENST00000566078 CRYBA1P05813 215 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 B2MP61769 119 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 ZNF90Q03938 601 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 CLLU1Q5K131 121 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 TSPAN15O95858 294 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 IGLC1P0CG04 106 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 GATA2P23769 480 aaPredicted RBP23.81■■□□□ 1.4
CTCF-203ENST00000566078 FHITP49789 147 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 TMEM41BQ5BJD5 291 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 FAM213BQ8TBF2 198 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 SERTAD4Q9NUC0 356 aa23.81■■□□□ 1.4
CTCF-203ENST00000566078 PSMB11A5LHX3 300 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 F8W735 103 aaPredicted RBP23.8■■□□□ 1.4
CTCF-203ENST00000566078 GNG7O60262 68 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 IGHG4P01861 327 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 RAB2AP61019 212 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 SLC35B1P78383 322 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 PRR20EP86478 221 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 PRR20CP86479 221 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 PRR20DP86480 221 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 PRR20BP86481 221 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 PRR20AP86496 221 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 ATP5G2Q06055 141 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 EEF1AKMT3Q96AZ1 226 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 SLC39A9Q9NUM3 307 aa23.8■■□□□ 1.4
CTCF-203ENST00000566078 TIGITQ495A1 244 aa23.79■■□□□ 1.4
CTCF-203ENST00000566078 C10orf99Q6UWK7 81 aa23.79■■□□□ 1.4
CTCF-203ENST00000566078 Q6ZRG5 221 aa23.79■■□□□ 1.4
CTCF-203ENST00000566078 ZNF502Q8TBZ5 544 aa23.79■■□□□ 1.4
CTCF-203ENST00000566078 KLK15Q9H2R5 256 aa23.79■■□□□ 1.4
CTCF-203ENST00000566078 YIF1AO95070 293 aa23.78■■□□□ 1.4
CTCF-203ENST00000566078 LINC00869P0C866 280 aa23.78■■□□□ 1.4
CTCF-203ENST00000566078 LCNL1Q6ZST4 164 aa23.78■■□□□ 1.4
CTCF-203ENST00000566078 TXN2Q99757 166 aa23.78■■□□□ 1.4
CTCF-203ENST00000566078 RPRMQ9NS64 109 aa23.78■■□□□ 1.4
CTCF-203ENST00000566078 TCF21O43680 179 aa23.77■■□□□ 1.4
CTCF-203ENST00000566078 MBP02144 154 aa23.77■■□□□ 1.4
CTCF-203ENST00000566078 FCGR2BP31994 310 aaPredicted RBP23.77■■□□□ 1.4
CTCF-203ENST00000566078 ACOT6Q3I5F7 207 aaPredicted RBP23.77■■□□□ 1.4
CTCF-203ENST00000566078 SAT2Q96F10 170 aaPredicted RBP23.77■■□□□ 1.4
CTCF-203ENST00000566078 OR2T8A6NH00 312 aa23.77■■□□□ 1.4
CTCF-203ENST00000566078 PSMB8P28062 276 aa23.77■■□□□ 1.4
CTCF-203ENST00000566078 SELENOTP62341 195 aa23.77■■□□□ 1.4
CTCF-203ENST00000566078 DPPA3Q6W0C5 159 aa23.77■■□□□ 1.4
CTCF-203ENST00000566078 TRAV30A0A087WSZ9 112 aa23.76■■□□□ 1.39
CTCF-203ENST00000566078 TMEM89A2RUT3 159 aa23.76■■□□□ 1.39
CTCF-203ENST00000566078 M6PRP20645 277 aa23.76■■□□□ 1.39
CTCF-203ENST00000566078 RAB9AP51151 201 aa23.76■■□□□ 1.39
CTCF-203ENST00000566078 ZNF616Q08AN1 781 aa23.76■■□□□ 1.39
CTCF-203ENST00000566078 GCSAMLQ5JQS6 135 aa23.76■■□□□ 1.39
CTCF-203ENST00000566078 CCDC140Q96MF4 163 aa23.76■■□□□ 1.39
CTCF-203ENST00000566078 TRBV7-1A0A0A6YYK4 115 aa23.75■■□□□ 1.39
CTCF-203ENST00000566078 IGKV1-17P01599 117 aa23.75■■□□□ 1.39
CTCF-203ENST00000566078 OR10G4Q8NGN3 311 aa23.75■■□□□ 1.39
CTCF-203ENST00000566078 OR10G9Q8NGN4 311 aa23.75■■□□□ 1.39
CTCF-203ENST00000566078 OR10G7Q8NGN6 311 aa23.75■■□□□ 1.39
CTCF-203ENST00000566078 USMG5Q96IX5 58 aa23.75■■□□□ 1.39
CTCF-203ENST00000566078 GPR183P32249 361 aa23.74■■□□□ 1.39
CTCF-203ENST00000566078 BLOC1S1P78537 153 aa23.74■■□□□ 1.39
CTCF-203ENST00000566078 TEX38Q6PEX7 206 aa23.74■■□□□ 1.39
CTCF-203ENST00000566078 SCGB2A1O75556 95 aa23.73■■□□□ 1.39
CTCF-203ENST00000566078 PXDC1Q5TGL8 231 aa23.73■■□□□ 1.39
CTCF-203ENST00000566078 FAM122CQ6P4D5 195 aa23.73■■□□□ 1.39
CTCF-203ENST00000566078 CLEC19AQ6UXS0 136 aa23.73■■□□□ 1.39
CTCF-203ENST00000566078 A0A0G2JLM5 398 aa23.72■■□□□ 1.39
CTCF-203ENST00000566078 FABP1P07148 127 aa23.72■■□□□ 1.39
CTCF-203ENST00000566078 FOXE3Q13461 319 aa23.72■■□□□ 1.39
CTCF-203ENST00000566078 RPP25LQ8N5L8 163 aaKnown RBP23.72■■□□□ 1.39
CTCF-203ENST00000566078 RCC1LQ96I51 464 aaKnown RBP23.72■■□□□ 1.39
CTCF-203ENST00000566078 GAR1Q9NY12 217 aaKnown RBP23.72■■□□□ 1.39
CTCF-203ENST00000566078 SLC25A22Q9H936 323 aa23.71■■□□□ 1.39
CTCF-203ENST00000566078 IGHV3-11P01762 117 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 CLEC3BP05452 202 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 ELANEP08246 267 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 CTSGP08311 255 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 PSG1P11464 419 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 ZNF726P1Q15940 193 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 SSX7Q7RTT5 188 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 CHRDL1Q9BU40 450 aa23.7■■□□□ 1.39
CTCF-203ENST00000566078 NUPL2O15504 423 aaKnown RBP23.7■■□□□ 1.38
CTCF-203ENST00000566078 TOMM40O96008 361 aa23.7■■□□□ 1.38
CTCF-203ENST00000566078 RD3LP0DJH9 198 aa23.7■■□□□ 1.38
CTCF-203ENST00000566078 C16orf95Q9H693 158 aa23.7■■□□□ 1.38
CTCF-203ENST00000566078 DOK5Q9P104 306 aa23.7■■□□□ 1.38
CTCF-203ENST00000566078 YPEL3P61236 119 aaPredicted RBP23.69■■□□□ 1.38
CTCF-203ENST00000566078 KLHDC1Q8N7A1 406 aa23.69■■□□□ 1.38
CTCF-203ENST00000566078 ATP6V0BQ99437 205 aa23.69■■□□□ 1.38
CTCF-203ENST00000566078 ACTR3CQ9C0K3 210 aaPredicted RBP23.69■■□□□ 1.38
CTCF-203ENST00000566078 TGOLN2O43493 480 aa23.68■■□□□ 1.38
CTCF-203ENST00000566078 EIF3GO75821 320 aaKnown RBP eCLIP23.68■■□□□ 1.38
CTCF-203ENST00000566078 RPLP1P05386 114 aaKnown RBP23.68■■□□□ 1.38
CTCF-203ENST00000566078 H2AFB1P0C5Y9 115 aa23.68■■□□□ 1.38
CTCF-203ENST00000566078 ADMP35318 185 aa23.68■■□□□ 1.38
CTCF-203ENST00000566078 CDC34P49427 236 aaPredicted RBP23.68■■□□□ 1.38
CTCF-203ENST00000566078 HRH4Q9H3N8 390 aa23.68■■□□□ 1.38
CTCF-203ENST00000566078 GNB4Q9HAV0 340 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms