RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 DYNLRB2Q8TF09 96 aa13.27□□□□□ -0.29
SHMT2-225ENST00000556798 WDR89Q96FK6 387 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-225ENST00000556798 SLC35E1Q96K37 410 aa13.27□□□□□ -0.29
SHMT2-225ENST00000556798 UFC1Q9Y3C8 167 aa13.27□□□□□ -0.29
SHMT2-225ENST00000556798 TSC22D2O75157 780 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 IGKV1-17P01599 117 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 METTL15P1P0C7V9 234 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 IGLC1P0CG04 106 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 CBLN1P23435 193 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 GPX4P36969 197 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-225ENST00000556798 H2BFSP57053 126 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 GAMTQ14353 236 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 OXA1LQ15070 435 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 OR8G2PQ6IF36 304 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 TMEM14EPQ6UXP3 125 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 ZNF600Q6ZNG1 722 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 PRR25Q96S07 402 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 SIGLEC8Q9NYZ4 499 aa13.26□□□□□ -0.29
SHMT2-225ENST00000556798 PUS1Q9Y606 427 aaKnown RBP eCLIP13.26□□□□□ -0.29
SHMT2-225ENST00000556798 PMS2P5A8MQ11 134 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 SCGB2A1O75556 95 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 TAS2R30P59541 319 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 LRRC37A5PQ49AS3 106 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 TOMM20LQ6UXN7 152 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 ACOT7LQ6ZUV0 252 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 OR1S2Q8NGQ3 325 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 NMES1Q9C002 83 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 C11orf1Q9H5F2 150 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 ZFAND3Q9H8U3 227 aa13.25□□□□□ -0.29
SHMT2-225ENST00000556798 DAZ1Q9NQZ3 744 aaKnown RBP13.25□□□□□ -0.29
SHMT2-225ENST00000556798 TRAV30A0A087WSZ9 112 aa13.24□□□□□ -0.29
SHMT2-225ENST00000556798 WI2-2373I1.2A0A1W2PRP0 233 aa13.24□□□□□ -0.29
SHMT2-225ENST00000556798 BCAP31P51572 246 aa13.24□□□□□ -0.29
SHMT2-225ENST00000556798 ELLP55199 621 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-225ENST00000556798 MLXQ9UH92 298 aa13.24□□□□□ -0.29
SHMT2-225ENST00000556798 ZNF256Q9Y2P7 627 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-225ENST00000556798 IGHV3-49A0A0A0MS15 119 aa13.23□□□□□ -0.29
SHMT2-225ENST00000556798 IZUMO1RA6ND01 250 aa13.23□□□□□ -0.29
SHMT2-225ENST00000556798 PVALBP20472 110 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-225ENST00000556798 CAV2P51636 162 aa13.23□□□□□ -0.29
SHMT2-225ENST00000556798 RRAS2P62070 204 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-225ENST00000556798 CD300EQ496F6 205 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-225ENST00000556798 BTNL8Q6UX41 500 aa13.23□□□□□ -0.29
SHMT2-225ENST00000556798 IGKV1D-37A0A075B6S9 117 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 SMCO3A2RU48 225 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 FAM24AA6NFZ4 105 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 ZFP92A6NM28 416 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 C8orf88P0DMB2 117 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 CXCL3P19876 107 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 AKR1C1Q04828 323 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 ARL16Q0P5N6 197 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 FCN2Q15485 313 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 DEFB114Q30KQ6 69 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 MARC2Q969Z3 335 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 MED28Q9H204 178 aa13.22□□□□□ -0.29
SHMT2-225ENST00000556798 MRPL27Q9P0M9 148 aaKnown RBP13.22□□□□□ -0.29
SHMT2-225ENST00000556798 ZMAT5Q9UDW3 170 aaKnown RBP13.22□□□□□ -0.29
SHMT2-225ENST00000556798 IGKV1OR2-108A0A075B7D4 117 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 IGHV3OR16-13A0A075B7E8 117 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 IGHV3-74A0A0B4J1X5 117 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 K7EIL1 84 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 K7EMT4 169 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 DEDDO75618 318 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 GP9P14770 177 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 YPEL3P61236 119 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-225ENST00000556798 CYCSP99999 105 aaKnown RBP13.21□□□□□ -0.29
SHMT2-225ENST00000556798 ZNF90Q03938 601 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 OR11H7Q8NGC8 314 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 OR10P1Q8NGE3 313 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 PPP1R1CQ8WVI7 109 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 GINS3Q9BRX5 216 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 OR5AC2Q9NZP5 309 aa13.21□□□□□ -0.29
SHMT2-225ENST00000556798 TRAV14DV4A0A0A6YYC5 116 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 IGHV7-4-1A0A0J9YVY3 117 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 IGSF23A1L1A6 192 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 H0YIZ8 118 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 CST7O76096 145 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 SCAF4O95104 1147 aaKnown RBP13.2□□□□□ -0.3
SHMT2-225ENST00000556798 TOMM40O96008 361 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 LCN12Q6JVE5 192 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 THAP8Q8NA92 274 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 Q8WTZ3 238 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 LYRM2Q9NU23 88 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-225ENST00000556798 TECRQ9NZ01 308 aaKnown RBP13.2□□□□□ -0.3
SHMT2-225ENST00000556798 SMPXQ9UHP9 88 aa13.2□□□□□ -0.3
SHMT2-225ENST00000556798 IGHV3-66A0A0C4DH42 116 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 APOHP02749 345 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-225ENST00000556798 IL4P05112 153 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 RD3LP0DJH9 198 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 PSG1P11464 419 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 DLK1P80370 383 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 OR2F1Q13607 317 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 TMEM61Q8N0U2 210 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 TMEM217Q8N7C4 229 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 OR2K2Q8NGT1 345 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 MRAPQ8TCY5 172 aa13.19□□□□□ -0.3
SHMT2-225ENST00000556798 SLC38A11Q08AI6 406 aa13.18□□□□□ -0.3
SHMT2-225ENST00000556798 USF2Q15853 346 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-225ENST00000556798 GUCA2BQ16661 112 aa13.18□□□□□ -0.3
SHMT2-225ENST00000556798 TMEM252Q8N6L7 170 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms