RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TMEM242Q9NWH2 141 aa20.87■□□□□ 0.93
CCDC88C-205ENST00000553403 PRELID1Q9Y255 219 aa20.87■□□□□ 0.93
CCDC88C-205ENST00000553403 YTHDF2Q9Y5A9 579 aaKnown RBP20.87■□□□□ 0.93
CCDC88C-205ENST00000553403 UNC79Q9P2D8 2635 aa20.87■□□□□ 0.93
CCDC88C-205ENST00000553403 NAV3Q8IVL0 2385 aa20.87■□□□□ 0.93
CCDC88C-205ENST00000553403 NPIPB5A8MRT5 1133 aa20.86■□□□□ 0.93
CCDC88C-205ENST00000553403 C10orf113Q5VZT2 155 aa20.86■□□□□ 0.93
CCDC88C-205ENST00000553403 RUSC1-AS1Q66K80 236 aa20.86■□□□□ 0.93
CCDC88C-205ENST00000553403 ZNF503Q96F45 646 aa20.86■□□□□ 0.93
CCDC88C-205ENST00000553403 ELOA3CA0A087WX78 387 aaPredicted RBP20.86■□□□□ 0.93
CCDC88C-205ENST00000553403 RNF212Q495C1 297 aa20.86■□□□□ 0.93
CCDC88C-205ENST00000553403 YPEL4Q96NS1 127 aa20.86■□□□□ 0.93
CCDC88C-205ENST00000553403 FAM120AOSQ5T036 256 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 PATE2Q6UY27 113 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 PIP4P2Q8N4L2 257 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 Q8N9W7 124 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 FAM167A-AS1Q96KT0 104 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 CTDSP1Q9GZU7 261 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 DOK5Q9P104 306 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 CENPEQ02224 2701 aa20.85■□□□□ 0.93
CCDC88C-205ENST00000553403 CRYBG3Q68DQ2 2970 aa20.84■□□□□ 0.93
CCDC88C-205ENST00000553403 OR7C2O60412 319 aa20.84■□□□□ 0.93
CCDC88C-205ENST00000553403 RPL23P62829 140 aaKnown RBP20.84■□□□□ 0.93
CCDC88C-205ENST00000553403 UHRF2Q96PU4 802 aa20.84■□□□□ 0.93
CCDC88C-205ENST00000553403 SLC25A2Q9BXI2 301 aa20.84■□□□□ 0.93
CCDC88C-205ENST00000553403 IGHV3-21A0A0B4J1V1 117 aa20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 IGHV1-69DA0A0B4J2H0 117 aa20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 IGHV1-69P01742 117 aa20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 CRYBA1P05813 215 aa20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 KIAA0141Q14154 515 aaPredicted RBP20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 TTC9CQ8N5M4 171 aa20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 FAM24BQ8N5W8 94 aa20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 OR51G1Q8NGK1 321 aa20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 FAM103A1Q9BTL3 118 aaKnown RBP20.83■□□□□ 0.93
CCDC88C-205ENST00000553403 K7EIM0 57 aa20.83■□□□□ 0.92
CCDC88C-205ENST00000553403 PLP1P60201 277 aa20.83■□□□□ 0.92
CCDC88C-205ENST00000553403 ADIRFQ15847 76 aa20.83■□□□□ 0.92
CCDC88C-205ENST00000553403 ASPHD1Q5U4P2 390 aa20.83■□□□□ 0.92
CCDC88C-205ENST00000553403 C11orf52Q96A22 123 aa20.83■□□□□ 0.92
CCDC88C-205ENST00000553403 NDUFB4O95168 129 aa20.82■□□□□ 0.92
CCDC88C-205ENST00000553403 HLA-DRB1P01911 266 aa20.82■□□□□ 0.92
CCDC88C-205ENST00000553403 IGLC1P0CG04 106 aa20.82■□□□□ 0.92
CCDC88C-205ENST00000553403 FLI1Q01543 452 aaPredicted RBP20.82■□□□□ 0.92
CCDC88C-205ENST00000553403 MLXQ9UH92 298 aa20.82■□□□□ 0.92
CCDC88C-205ENST00000553403 CELSR2Q9HCU4 2923 aa20.81■□□□□ 0.92
CCDC88C-205ENST00000553403 NDPQ00604 133 aa20.81■□□□□ 0.92
CCDC88C-205ENST00000553403 ZNF355PQ9NSJ1 428 aa20.81■□□□□ 0.92
CCDC88C-205ENST00000553403 IGHV7-81A0A0B4J1V7 117 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 SLC25A16P16260 332 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 MORN5Q5VZ52 161 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 OR5AU1Q8NGC0 362 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 RASL11BQ9BPW5 248 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 NOTCH2Q04721 2471 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 SCO2A0A1W2PP80 73 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 A0A1W2PRE2 83 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 CLDN34H7C241 214 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 MSMBP08118 114 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 RAB5AP20339 215 aa20.8■□□□□ 0.92
CCDC88C-205ENST00000553403 IGLV11-55A0A075B6I3 123 aa20.79■□□□□ 0.92
CCDC88C-205ENST00000553403 TRAV5A0A0B4J249 113 aa20.79■□□□□ 0.92
CCDC88C-205ENST00000553403 HYPMO75409 117 aa20.79■□□□□ 0.92
CCDC88C-205ENST00000553403 FABP1P07148 127 aa20.79■□□□□ 0.92
CCDC88C-205ENST00000553403 NRGNQ92686 78 aa20.79■□□□□ 0.92
CCDC88C-205ENST00000553403 RBM14Q96PK6 669 aaKnown RBP20.79■□□□□ 0.92
CCDC88C-205ENST00000553403 AKAP6Q13023 2319 aa20.79■□□□□ 0.92
CCDC88C-205ENST00000553403 LINC00305Q7Z4B0 112 aa20.78■□□□□ 0.92
CCDC88C-205ENST00000553403 OR1B1Q8NGR6 318 aa20.78■□□□□ 0.92
CCDC88C-205ENST00000553403 FANCD2OSQ96PS1 177 aa20.78■□□□□ 0.92
CCDC88C-205ENST00000553403 PAXXQ9BUH6 204 aa20.78■□□□□ 0.92
CCDC88C-205ENST00000553403 TEX15Q9BXT5 2789 aa20.77■□□□□ 0.92
CCDC88C-205ENST00000553403 EGR2P11161 476 aaPredicted RBP20.77■□□□□ 0.92
CCDC88C-205ENST00000553403 ORM2P19652 201 aa20.77■□□□□ 0.92
CCDC88C-205ENST00000553403 ELOBQ15370 118 aa20.77■□□□□ 0.92
CCDC88C-205ENST00000553403 CLEC12BQ2HXU8 276 aa20.77■□□□□ 0.92
CCDC88C-205ENST00000553403 STXBP6Q8NFX7 210 aa20.77■□□□□ 0.92
CCDC88C-205ENST00000553403 WNK2Q9Y3S1 2297 aa20.77■□□□□ 0.92
CCDC88C-205ENST00000553403 B4DSR2 109 aa20.77■□□□□ 0.91
CCDC88C-205ENST00000553403 UBE2L3P68036 154 aaKnown RBP20.77■□□□□ 0.91
CCDC88C-205ENST00000553403 ZNF48Q96MX3 618 aaPredicted RBP20.77■□□□□ 0.91
CCDC88C-205ENST00000553403 DERL1Q9BUN8 251 aa20.77■□□□□ 0.91
CCDC88C-205ENST00000553403 MEGF9Q9H1U4 602 aa20.77■□□□□ 0.91
CCDC88C-205ENST00000553403 OR51M1Q9H341 326 aa20.77■□□□□ 0.91
CCDC88C-205ENST00000553403 GSX1Q9H4S2 264 aaPredicted RBP20.77■□□□□ 0.91
CCDC88C-205ENST00000553403 OR10J4P0C629 311 aa20.76■□□□□ 0.91
CCDC88C-205ENST00000553403 TIGITQ495A1 244 aa20.76■□□□□ 0.91
CCDC88C-205ENST00000553403 ANAPC16Q96DE5 110 aa20.76■□□□□ 0.91
CCDC88C-205ENST00000553403 TRAV40A0A0B4J280 105 aa20.75■□□□□ 0.91
CCDC88C-205ENST00000553403 LINC01551Q86U37 167 aa20.75■□□□□ 0.91
CCDC88C-205ENST00000553403 THYN1Q9P016 225 aa20.75■□□□□ 0.91
CCDC88C-205ENST00000553403 TRAV30A0A087WSZ9 112 aa20.74■□□□□ 0.91
CCDC88C-205ENST00000553403 C1orf196B1AJZ1 125 aa20.74■□□□□ 0.91
CCDC88C-205ENST00000553403 IGKV1-17P01599 117 aa20.74■□□□□ 0.91
CCDC88C-205ENST00000553403 PSG1P11464 419 aa20.74■□□□□ 0.91
CCDC88C-205ENST00000553403 C16orf82Q7Z2V1 217 aa20.74■□□□□ 0.91
CCDC88C-205ENST00000553403 Q8WTZ3 238 aa20.74■□□□□ 0.91
CCDC88C-205ENST00000553403 ITPR2Q14571 2701 aa20.74■□□□□ 0.91
CCDC88C-205ENST00000553403 TRAV20A0A0B4J274 112 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 GATA3P23771 443 aa20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 KLF17Q5JT82 389 aaPredicted RBP20.73■□□□□ 0.91
CCDC88C-205ENST00000553403 ZNF343Q6P1L6 599 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms