RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 BTNL8Q6UX41 500 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 TOMM20LQ6UXN7 152 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 MARC2Q969Z3 335 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 C2orf50Q96LR7 162 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 ZFAND3Q9H8U3 227 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 TECRQ9NZ01 308 aaKnown RBP10.66□□□□□ -0.7
PTCH1-226ENST00000553011 PSENENQ9NZ42 101 aa10.66□□□□□ -0.7
PTCH1-226ENST00000553011 MRPL27Q9P0M9 148 aaKnown RBP10.66□□□□□ -0.7
PTCH1-226ENST00000553011 STRAPQ9Y3F4 350 aaKnown RBP10.66□□□□□ -0.7
PTCH1-226ENST00000553011 TRAV30A0A087WSZ9 112 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 IGHV3-49A0A0A0MS15 119 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 PRSS46E5RG02 174 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 K7EMT4 169 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 OR10J1P30954 320 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 GPX4P36969 197 aaPredicted RBP10.65□□□□□ -0.7
PTCH1-226ENST00000553011 RPP30P78346 268 aaKnown RBP10.65□□□□□ -0.7
PTCH1-226ENST00000553011 GAMTQ14353 236 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 GSG1LQ6UXU4 331 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 TMEM61Q8N0U2 210 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 OR2K2Q8NGT1 345 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 SMIM8Q96KF7 97 aa10.65□□□□□ -0.7
PTCH1-226ENST00000553011 LSM4Q9Y4Z0 139 aaKnown RBP10.65□□□□□ -0.7
PTCH1-226ENST00000553011 ZNF785A8K8V0 405 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 K7EPK0 472 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 SCGB2A1O75556 95 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 CCNKO75909 580 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 SIX6O95475 246 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 PTTG1O95997 202 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 OR1S2Q8NGQ3 325 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 WDR89Q96FK6 387 aaPredicted RBP10.64□□□□□ -0.71
PTCH1-226ENST00000553011 SLC35E1Q96K37 410 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 RAB40CQ96S21 281 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 SMPXQ9UHP9 88 aa10.64□□□□□ -0.71
PTCH1-226ENST00000553011 LSM5Q9Y4Y9 91 aaKnown RBP10.64□□□□□ -0.71
PTCH1-226ENST00000553011 IGHV3OR16-13A0A075B7E8 117 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 IGHV3-74A0A0B4J1X5 117 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 IGHV7-4-1A0A0J9YVY3 117 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 C7orf66A4D0T2 115 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 GOSR2O14653 212 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 IL15RAQ13261 267 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 GUCA2BQ16661 112 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 Q8N1Y9 231 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 GINS3Q9BRX5 216 aa10.63□□□□□ -0.71
PTCH1-226ENST00000553011 IGKV1D-37A0A075B6S9 117 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 TRAV14DV4A0A0A6YYC5 116 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 PMS2P5A8MQ11 134 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 TSC22D2O75157 780 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 SCAF4O95104 1147 aaKnown RBP10.62□□□□□ -0.71
PTCH1-226ENST00000553011 APOHP02749 345 aaPredicted RBP10.62□□□□□ -0.71
PTCH1-226ENST00000553011 METTL15P1P0C7V9 234 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 S100A10P60903 97 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 YPEL3P61236 119 aaPredicted RBP10.62□□□□□ -0.71
PTCH1-226ENST00000553011 RAB32Q13637 225 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 OR8G2PQ6IF36 304 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 TMEM14EPQ6UXP3 125 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 ACOT7LQ6ZUV0 252 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 RHPN1-AS1Q9BWJ2 59 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 C11orf1Q9H5F2 150 aa10.62□□□□□ -0.71
PTCH1-226ENST00000553011 ZFP92A6NM28 416 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 L7N2F9 121 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 CHEK1O14757 476 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 SSNA1O43805 119 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 TAS2R30P59541 319 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 VAMP2P63027 116 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 DCTN2Q13561 401 aaKnown RBP10.61□□□□□ -0.71
PTCH1-226ENST00000553011 Q8WTZ3 238 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 SMAD5-AS1Q9Y6J3 95 aa10.61□□□□□ -0.71
PTCH1-226ENST00000553011 IGKV1OR2-108A0A075B7D4 117 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 IGHV3-66A0A0C4DH42 116 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 TOMM40O96008 361 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 CD7P09564 240 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 RD3LP0DJH9 198 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 PSG1P11464 419 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 RRAS2P62070 204 aaPredicted RBP10.6□□□□□ -0.71
PTCH1-226ENST00000553011 ZNF90Q03938 601 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 ARL16Q0P5N6 197 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 RBPMS2Q6ZRY4 209 aaKnown RBP10.6□□□□□ -0.71
PTCH1-226ENST00000553011 LILRB2Q8N423 598 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 THAP8Q8NA92 274 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 ST8SIA2Q92186 375 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 RNF2Q99496 336 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 ALG5Q9Y673 324 aa10.6□□□□□ -0.71
PTCH1-226ENST00000553011 COL7A1Q02388 2944 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 TRAV25A0A0B4J276 109 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 IL4P05112 153 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 NPPCP23582 126 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 BCAP31P51572 246 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 H2BFSP57053 126 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 CD81P60033 236 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 AKR1C1Q04828 323 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 OR2F1Q13607 317 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 USF2Q15853 346 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-226ENST00000553011 GTSCR1Q86UQ5 136 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 METTL26Q96S19 204 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 TRGV9Q99603 122 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 VSIRQ9H7M9 311 aa10.59□□□□□ -0.71
PTCH1-226ENST00000553011 SMCO3A2RU48 225 aa10.58□□□□□ -0.72
PTCH1-226ENST00000553011 FAM24AA6NFZ4 105 aa10.58□□□□□ -0.72
PTCH1-226ENST00000553011 TSPAN4O14817 238 aa10.58□□□□□ -0.72
PTCH1-226ENST00000553011 CRYBB3P26998 211 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms