RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 OTOSQ8NHW6 89 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 MCFD2Q8NI22 146 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 FNDC9Q8TBE3 224 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 NEK7Q8TDX7 302 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 DTD1Q8TEA8 209 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 PSMF1Q92530 271 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 CCL17Q92583 94 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 TMIGD2Q96BF3 282 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 SLAMF6Q96DU3 332 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF75AQ96N20 296 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 GPX7Q96SL4 187 aaPredicted RBP1.14□□□□□ -2.23
LIMA1-209ENST00000552008 NMNAT3Q96T66 252 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 MGLLQ99685 303 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 HIGD2AQ9BW72 106 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 SUCNR1Q9BXA5 334 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 C6orf62Q9GZU0 229 aaPredicted RBP1.14□□□□□ -2.23
LIMA1-209ENST00000552008 METTL9Q9H1A3 318 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM138Q9NPI0 162 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 KCNIP2Q9NS61 270 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 RBM12B-AS1Q9P1G2 102 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 COPZ2Q9P299 210 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 SCP2D1Q9UJQ7 156 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 OR52A1Q9UKL2 312 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 PRELID3BQ9Y3B1 194 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 RBM7Q9Y580 266 aaKnown RBP1.14□□□□□ -2.23
LIMA1-209ENST00000552008 R4GMQ9 66 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 R4GN34 69 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 U3KQA8 63 aa1.14□□□□□ -2.23
LIMA1-209ENST00000552008 CITO14578 2027 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 LCTP09848 1927 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PLXNB3Q9ULL4 1909 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CEP350Q5VT06 3117 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 IGKV1OR2-108A0A075B7D4 117 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TRAV27A0A087WT01 109 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TRGV10A0A0A0MS01 117 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 IGHV3-43A0A0B4J1X8 118 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TRAV1-2A0A0B4J238 106 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TRAV38-1A0A0B4J264 116 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 A0A0J9YW62 118 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TRDV1A0A1B0GX56 115 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 A0A1W2PQL4 384 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 hADV38S2A0JD32 116 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 NAP1L6A6NFF2 107 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 FABP12A6NFH5 140 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 FAM183AA6NL82 134 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GGTLC3B5MD39 225 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 DISC1C4P0D8 188 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CLDN25C9JDP6 229 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 E7EQL1 145 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 LRRN3E7EW58 273 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 M0R135 149 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 M0R233 179 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 FXYD1O00168 92 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TOR1AO14656 332 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 FFAR1O14842 300 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 DEGS1O15121 323 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 NDUFB3O43676 98 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 NOS1APO75052 506 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CRTAPO75718 401 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 RPP14O95059 124 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 DHFRP00374 187 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CA2P00918 260 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 IFNA21P01568 189 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 IGKV1D-33P01593 117 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 IGKV1-33P01594 117 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 P0C880 135 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PET100P0DJ07 73 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 NQO2P16083 231 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 ALOX5APP20292 161 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PVALBP20472 110 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CRHBPP24387 322 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 ERP29P30040 261 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 AGTR1P30556 359 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GLRXP35754 106 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 KCNJ3P48549 501 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 AQP4P55087 323 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GNG2P59768 71 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 RAB2AP61019 212 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GNG3P63215 75 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 H3F3AP84243 136 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TNFAIP6P98066 277 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 SSBP1Q04837 148 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CD164Q04900 197 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 BAXQ07812 192 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF846Q147U1 533 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 SMCO1Q147U7 214 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 OR8B8Q15620 311 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PSG3Q16557 428 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 SMIM21Q3B7S5 101 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PABPC1L2AQ5JQF8 200 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 C12orf73Q69YU5 71 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 EIF5AL1Q6IS14 154 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 FAM19A1Q7Z5A9 133 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TRAPPC6BQ86SZ2 158 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 MRPL52Q86TS9 123 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 LRRC28Q86X40 367 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 STX12Q86Y82 276 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CLVS1Q8IUQ0 354 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 MSRB3Q8IXL7 192 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 OR6V1Q8N148 313 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms