RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 OR10W1Q8NGF6 305 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 OR4A4PQ8NGN8 299 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 OR10J5Q8NHC4 309 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 VN1R17PQ8TDU5 208 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 SCARB1Q8WTV0 552 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 MAFIPQ8WZ33 124 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 PGLYRP3Q96LB9 341 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 DERL3Q96Q80 235 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 CMSS1Q9BQ75 279 aaKnown RBP4.52□□□□□ -1.69
LIMA1-204ENST00000549064 UQCC2Q9BRT2 126 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 CABLES2Q9BTV7 478 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 LPAR5Q9H1C0 372 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 C21orf62Q9NYP8 219 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 XCL2Q9UBD3 114 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 EXTL2Q9UBQ6 330 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 GHRLQ9UBU3 117 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 RABAC1Q9UI14 185 aa4.52□□□□□ -1.69
LIMA1-204ENST00000549064 TRBV6-7A0A0A0MS04 114 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 TRAV14DV4A0A0A6YYC5 116 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 TRAV3A0A0B4J244 114 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 SNTNA6NMZ2 147 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 FOXI3A8MTJ6 420 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-204ENST00000549064 TMEM14DPA8MWL7 114 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 KRTAP29-1A8MX34 341 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-204ENST00000549064 CTSGP08311 255 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF688P0C7X2 276 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 UBBP0CG47 229 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 HLA-GP17693 338 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 CELP19835 753 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 SERPINB10P48595 397 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 OR2B8PP59922 312 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 QRFPP83859 136 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 Q56UQ5 140 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 YIF1BQ5BJH7 314 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 SPSB3Q6PJ21 355 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 VSTM2AQ8TAG5 236 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 ARHGAP5-AS1Q96IT6 56 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 SLC29A1Q99808 456 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 NIPSNAP3BQ9BS92 247 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 PECRQ9BY49 303 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 THYN1Q9P016 225 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 ARL2BPQ9Y2Y0 163 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 LINC00588Q9Y4M8 146 aa4.51□□□□□ -1.69
LIMA1-204ENST00000549064 IGHV3OR16-12A0A075B7B8 117 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 K7EQG2 157 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 IGKV2-30P06310 120 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 Q6ZRG5 221 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 H1FOOQ8IZA3 346 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-204ENST00000549064 GDPD1Q8N9F7 314 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 STXBP6Q8NFX7 210 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 TMEM37Q8WXS4 190 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 DGCR14Q96DF8 476 aaKnown RBP4.5□□□□□ -1.69
LIMA1-204ENST00000549064 OR10C1Q96KK4 312 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 GINS4Q9BRT9 223 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 VSIRQ9H7M9 311 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 HRASLSQ9HDD0 168 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 BABAM2Q9NXR7 383 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 CLEC2DQ9UHP7 191 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 POMPQ9Y244 141 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 MRPS7Q9Y2R9 242 aaKnown RBP4.5□□□□□ -1.69
LIMA1-204ENST00000549064 RBMX2Q9Y388 322 aaKnown RBP4.5□□□□□ -1.69
LIMA1-204ENST00000549064 PRELID3BQ9Y3B1 194 aa4.5□□□□□ -1.69
LIMA1-204ENST00000549064 LRP1Q07954 4544 aaKnown RBP4.5□□□□□ -1.69
LIMA1-204ENST00000549064 IGKV1D-8A0A087WSZ0 117 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 TRAV2A0A0B4J234 112 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 K7EIM0 57 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 EIF4EP06730 217 aaKnown RBP4.49□□□□□ -1.69
LIMA1-204ENST00000549064 FCGR3AP08637 254 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 OR13C7P0DN81 318 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 CALB2P22676 271 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 FXYD7P58549 80 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 TAS2R43P59537 309 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 WT1-ASQ06250 92 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 INSL4Q14641 139 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 TIMM50Q3ZCQ8 353 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 C1orf100Q5SVJ3 147 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 TMPRSS11AQ6ZMR5 421 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF705AQ6ZN79 300 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-204ENST00000549064 C15orf53Q8NAA6 179 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 DUSP18Q8NEJ0 188 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 OR4S2Q8NH73 311 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 TCTEX1D2Q8WW35 142 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 APH1BQ8WW43 257 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF486Q96H40 463 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-204ENST00000549064 FAM218AQ96MZ4 157 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 RAB40CQ96S21 281 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 FNDC4Q9H6D8 234 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-204ENST00000549064 FGF20Q9NP95 211 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-204ENST00000549064 SPATA2Q9UM82 520 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 FAT3Q8TDW7 4589 aa4.49□□□□□ -1.69
LIMA1-204ENST00000549064 IGKV1D-13A0A0B4J2D9 117 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 TMEM189A5PLL7 270 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF705FA8MVS1 300 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-204ENST00000549064 BUB3O43684 328 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 IGHV3-48P01763 117 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 SERPINE2P07093 398 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF705DP0CH99 300 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF705BP0CI00 300 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-204ENST00000549064 IGKV1-13P0DP09 117 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 CD37P11049 281 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms