RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ADMP35318 185 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 MFAP4P55083 255 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 TRBV24-1A0A075B6N3 115 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 FOLR2P14207 255 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 SPRNQ5BIV9 151 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.84□□□□□ -0.35
CUX1-211ENST00000546411 TMEM178BH3BS89 294 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 HIST3H2BBQ8N257 126 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 TCF24Q7RTU0 167 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 LINC00479Q96M42 142 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 YTHDF2Q9Y5A9 579 aaKnown RBP12.84□□□□□ -0.35
CUX1-211ENST00000546411 A0A1B0GW64 132 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 F5H697 171 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 TIMM23O14925 209 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 FAM106CPP0CH98 169 aa12.84□□□□□ -0.35
CUX1-211ENST00000546411 KLRB1Q12918 225 aa12.83□□□□□ -0.35
CUX1-211ENST00000546411 CRIP3Q6Q6R5 217 aa12.83□□□□□ -0.35
CUX1-211ENST00000546411 RABAC1Q9UI14 185 aa12.83□□□□□ -0.35
CUX1-211ENST00000546411 FAM215AQ9Y5M1 114 aa12.83□□□□□ -0.35
CUX1-211ENST00000546411 PLA2G5P39877 138 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 TFPI2P48307 235 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 TMEM256Q8N2U0 113 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 Q8NFD4 153 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 TMEM191AQ9H0A3 160 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 TMEM170AQ8WVE7 144 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 A0A1B0GUS0 222 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 HIGD1CA8MV81 97 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 WNT2P09544 360 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 PF4V1P10720 104 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 ATG101Q9BSB4 218 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 CBY1Q9Y3M2 126 aa12.83□□□□□ -0.36
CUX1-211ENST00000546411 TBL2Q9Y4P3 447 aaKnown RBP12.83□□□□□ -0.36
CUX1-211ENST00000546411 AMBPP02760 352 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 TWIST1Q15672 202 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 SPATA45Q537H7 98 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 Q6ZPA2 131 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 TMEM189A5PLL7 270 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 PTTG1IPP53801 180 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 MAP1LC3CQ9BXW4 147 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 HINT1P49773 126 aaPredicted RBP12.82□□□□□ -0.36
CUX1-211ENST00000546411 ATP5IP56385 69 aaPredicted RBP12.82□□□□□ -0.36
CUX1-211ENST00000546411 KLRD1Q13241 179 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 TBR1Q16650 682 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 C11orf53Q8IXP5 236 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 WNK1Q9H4A3 2382 aa12.82□□□□□ -0.36
CUX1-211ENST00000546411 DYSFO75923 2080 aa12.81□□□□□ -0.36
CUX1-211ENST00000546411 CA7P43166 264 aa12.81□□□□□ -0.36
CUX1-211ENST00000546411 ZNF672Q499Z4 452 aaPredicted RBP12.81□□□□□ -0.36
CUX1-211ENST00000546411 RNASEH2CQ8TDP1 164 aaKnown RBP12.81□□□□□ -0.36
CUX1-211ENST00000546411 SONP18583 2426 aaKnown RBP12.81□□□□□ -0.36
CUX1-211ENST00000546411 LEPROTL1O95214 131 aa12.81□□□□□ -0.36
CUX1-211ENST00000546411 IGHV1-8P0DP01 117 aa12.81□□□□□ -0.36
CUX1-211ENST00000546411 OR5R1Q8NH85 324 aa12.81□□□□□ -0.36
CUX1-211ENST00000546411 Q9H3A6 140 aa12.81□□□□□ -0.36
CUX1-211ENST00000546411 ASPHD1Q5U4P2 390 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 TLN2Q9Y4G6 2542 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 CBY3A6NI87 242 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 SMIM17P0DL12 118 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 AREGP15514 252 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 GPR183P32249 361 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 LOXL3P58215 753 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 C10orf91Q5T1B1 145 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 SPRY4Q9C004 299 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 BET1LQ9NYM9 111 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 RNF224P0DH78 156 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 Q6ZSR3 168 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 C14orf144Q96I85 54 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 LINC00527Q9UJ94 153 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 TCRBV4S1A1TA0A5B7 111 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 H0YJW9 148 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 COL8A2P25067 703 aa12.8□□□□□ -0.36
CUX1-211ENST00000546411 SLC25A48Q6ZT89 311 aaKnown RBP12.8□□□□□ -0.36
CUX1-211ENST00000546411 IGHV2-26A0A0B4J1V2 119 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 C15orf65H3BRN8 121 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 C19orf35Q6ZS72 473 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 VKORC1Q9BQB6 163 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 TMEM242Q9NWH2 141 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 OR2T8A6NH00 312 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 ASCL2Q99929 193 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 SELENOKQ9Y6D0 94 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 SETD2Q9BYW2 2564 aaPredicted RBP12.79□□□□□ -0.36
CUX1-211ENST00000546411 RELQ04864 619 aaPredicted RBP12.79□□□□□ -0.36
CUX1-211ENST00000546411 DIAPH2-AS1Q14236 149 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 SPANXN1Q5VSR9 72 aa12.79□□□□□ -0.36
CUX1-211ENST00000546411 TRAV8-1A0A0A6YYK1 113 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 ST6GALNAC3Q8NDV1 305 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 C10orf142B7Z368 130 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 E7EQL1 145 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 CKS2P33552 79 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 C17orf58Q2M2W7 97 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 ST6GALNAC6Q969X2 333 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 C21orf62Q9NYP8 219 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 FBXL7Q9UJT9 491 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 ZNF257Q9Y2Q1 563 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 CFAP54Q96N23 3096 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 FAM90A9PA6NNJ1 464 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 IGLV1-44P01699 117 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 GZMBP10144 247 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 ATP5J2P56134 94 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 KRTAP27-1Q3LI81 207 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms