RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DKK2Q9UBU2 259 aa12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 HLA-DRB4X5D2U9 266 aa12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 TRAV30A0A087WSZ9 112 aa12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 A0A0G2JRQ6 117 aa12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 TMEM189A5PLL7 270 aa12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 AKR1C2P52895 323 aa12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 DEFB1P60022 68 aa12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 RND3P61587 244 aa12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 SNRPD3P62318 126 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 USF2Q15853 346 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 SEPSECSQ9HD40 501 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 NRN1Q9NPD7 142 aa12.64□□□□□ -0.39
CLSTN3-214ENST00000542663 SMIM9A6NGZ8 99 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 SCGB2A1O75556 95 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 PI3P19957 117 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 RPS19P39019 145 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 FXYD7P58549 80 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 TNP2Q05952 138 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 FAM222AQ5U5X8 452 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 PRSS54Q6PEW0 395 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 CROCCP3Q8IVE0 287 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 MAPKAPK5-AS1Q8N8E1 139 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 OR1S2Q8NGQ3 325 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 NIPSNAP3BQ9BS92 247 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 PDCD10Q9BUL8 212 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 Q9H521 79 aa12.63□□□□□ -0.39
CLSTN3-214ENST00000542663 IGHV3OR16-12A0A075B7B8 117 aa12.62□□□□□ -0.39
CLSTN3-214ENST00000542663 BUB3O43684 328 aa12.62□□□□□ -0.39
CLSTN3-214ENST00000542663 RND2P52198 227 aa12.62□□□□□ -0.39
CLSTN3-214ENST00000542663 YPEL3P61236 119 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-214ENST00000542663 DHODHQ02127 395 aa12.62□□□□□ -0.39
CLSTN3-214ENST00000542663 SIGLEC15Q6ZMC9 328 aa12.62□□□□□ -0.39
CLSTN3-214ENST00000542663 RFNGQ9Y644 331 aa12.62□□□□□ -0.39
CLSTN3-214ENST00000542663 C16orf90A8MZG2 172 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 M0QYG6 137 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 IGKV3-20P01619 116 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 HTN3P15516 51 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 OR10J1P30954 320 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 NKX2-1P43699 371 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 PIGPP57054 158 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 OXA1LQ15070 435 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 ZNF709Q8N972 641 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 Q8WTZ3 238 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 YTHDF1Q9BYJ9 559 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 ENY2Q9NPA8 101 aa12.61□□□□□ -0.39
CLSTN3-214ENST00000542663 C3orf85A0A1B0GTC6 90 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 IL4P05112 153 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 PGAM2P15259 253 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 RCVRNP35243 200 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 NEDD8Q15843 81 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 TMEM88Q6PEY1 159 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 LHFPL1Q86WI0 220 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 ZNF486Q96H40 463 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 SCPEP1Q9HB40 452 aa12.6□□□□□ -0.39
CLSTN3-214ENST00000542663 TEX48A0A1B0GUV7 120 aa12.59□□□□□ -0.39
CLSTN3-214ENST00000542663 RPS10-NUDT3A0A1W2PQS6 291 aa12.59□□□□□ -0.39
CLSTN3-214ENST00000542663 NXPH3O95157 252 aa12.59□□□□□ -0.39
CLSTN3-214ENST00000542663 SP6Q3SY56 376 aa12.59□□□□□ -0.39
CLSTN3-214ENST00000542663 AARDQ4LEZ3 155 aa12.59□□□□□ -0.39
CLSTN3-214ENST00000542663 TMEM170AQ8WVE7 144 aa12.59□□□□□ -0.39
CLSTN3-214ENST00000542663 SAV1Q9H4B6 383 aaPredicted RBP12.59□□□□□ -0.39
CLSTN3-214ENST00000542663 SLC25A4P12235 298 aa12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 HTR2BP41595 481 aa12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 SPCS3P61009 180 aa12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 C2orf83Q53S99 150 aa12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 SNX29P2Q8IUI4 249 aa12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 C1orf158Q8N1D5 194 aa12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 WDR12Q9GZL7 423 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 SLC35B3Q9H1N7 401 aa12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 YTHDF2Q9Y5A9 579 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-214ENST00000542663 ATG12O94817 140 aa12.57□□□□□ -0.4
CLSTN3-214ENST00000542663 TOMM40O96008 361 aa12.57□□□□□ -0.4
CLSTN3-214ENST00000542663 UCP1P25874 307 aa12.57□□□□□ -0.4
CLSTN3-214ENST00000542663 TRIM16LQ309B1 348 aa12.57□□□□□ -0.4
CLSTN3-214ENST00000542663 CLUHP3Q96NS8 147 aa12.57□□□□□ -0.4
CLSTN3-214ENST00000542663 ZNF79Q15937 498 aa12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 GSG1LQ6UXU4 331 aa12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 FOXI2Q6ZQN5 318 aa12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 Q8N1X5 172 aa12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 OR52E5Q8NH55 327 aa12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 RNASEH2CQ8TDP1 164 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 NPIPB3Q92617 1050 aa12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 RRNAD1Q96FB5 475 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 HEYLQ9NQ87 328 aaPredicted RBP12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 HERC1Q15751 4861 aa12.56□□□□□ -0.4
CLSTN3-214ENST00000542663 LOC102723971A0A1B0GUV8 181 aa12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 SOCS3O14543 225 aa12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 GSTZ1O43708 216 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 APOA1P02647 267 aa12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 RD3LP0DJH9 198 aa12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 PSG1P11464 419 aa12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 FAM3BP58499 235 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 LSM3P62310 102 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 OR51G1Q8NGK1 321 aa12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 COMMD3Q9UBI1 195 aa12.55□□□□□ -0.4
CLSTN3-214ENST00000542663 DAD1P61803 113 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 C15orf53Q8NAA6 179 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 SLC24A4Q8NFF2 622 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 OR4B1Q8NGF8 309 aa12.54□□□□□ -0.4
CLSTN3-214ENST00000542663 RNASE11Q8TAA1 199 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms